Rhincodon typus (whale shark): 109923181
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Entry
109923181 CDS
T06055
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K20894
shank-associated RH domain-interacting protein
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04217
Necroptosis
rtp04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
109923181
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
109923181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rtp04121
]
109923181
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
LUBAC complex
109923181
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
ubiquitin
PH
Motif
Other DBs
NCBI-GeneID:
109923181
NCBI-ProteinID:
XP_048462788
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All DBs
Position
2:1689725..1702313
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AA seq
422 aa
AA seq
DB search
MASNETRGPAPTQATVLMSCRVSEGECGGRGLTLCPGPGPRAVTDDQPSALRLQLSMERP
GEFRLGVRSGDSRLGKSLSLYEFNLKDIIYEFKSATCHRISTRNQPSEQLTYHFEDEKEA
QKWSTIITSSLREVEKASSSAGAQNHSESTGIPVLSAQPVTEGGPRAGAELLGAGHDVPR
SGMDISRTEDLIQQLAKAIEAGDSVLSSECAVSLAQQKVSLGIWVKDVYPNQQISMKVEV
EDATSSATIFVKVFPYATVSTLKQQVFRDFGFHPMVQRWIIGQCLATDHRTLSSYGVRKD
GVTTFLYLLSAKLANLPRRQYEEEQALTVMAHDEMSIDMQRRESLLEEERRKYSTLPSKL
PVNKGRVPLKSKDGRMDINNITQCVNLELKSLQSLSLHDAWNRPTQQVSPASSQVSLESG
QS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaacgagacccggggcccggctccgacacaggccacggtgctgatgtcgtgc
cgggtgtcggaaggagagtgtggcggccgcggcctgactctgtgtcccgggcccgggcct
cgggcagtgacggacgaccagccctcggccctgcgcctgcagctgagcatggagcggccc
ggggagttccggctgggagtccgctccggggacagccgcctcgggaaaagtctgagcctt
tatgaatttaatttgaaagatatcatctatgaattcaaaagtgcgacctgccatagaatt
agtacaaggaaccaaccatctgagcagctgacgtatcactttgaagatgagaaggaggct
cagaaatggtcaaccatcatcaccagctctttgagggaagttgagaaagcaagttcctct
gctggtgcacaaaaccacagtgagtcaacaggaatcccagtactgtcagctcaaccagtg
acagagggaggtcccagggcaggagcagagctgcttggagctggccacgacgttccaaga
tcaggaatggatatctccagaacagaggatctgattcagcaacttgccaaggcaatagag
gcaggtgattctgtcttgtcgtctgagtgtgctgtgagtctagctcagcagaaagtgtct
ctcggcatttgggtgaaggatgtttatcccaatcaacagatcagtatgaaagttgaagtg
gaggacgccacatcttctgccaccatttttgtgaaggtcttcccctatgcaactgtttcc
acgttaaagcaacaggtattccgagattttgggttccaccctatggttcagcgctggatt
attggccagtgcctggcgactgatcacagaactctgagttcgtacggtgtgaggaaagac
ggggtcacaaccttcctgtacctgctgtcagcaaagctggccaacctaccacggcgccag
tacgaggaggagcaggctctcactgtcatggcccatgatgagatgtccattgatatgcag
aggagggagagccttctggaggaagagaggagaaagtacagtacgttaccgagcaagctg
cctgtgaataaaggtagagtgcccctgaagagcaaggatggaaggatggacatcaataat
attactcaatgtgtcaatctggagctgaaatcacttcagtctctctcattacacgatgct
tggaacagacccacacagcaagtttcccctgcatcatcacaggtatcgttggaatcaggc
cagagttag
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