Rhincodon typus (whale shark): 109925496
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Entry
109925496 CDS
T06055
Symbol
cftr
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp02010
ABC transporters
rtp04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
109925496 (cftr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
109925496 (cftr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rtp02000
]
109925496 (cftr)
Enzymes [BR:
rtp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
109925496 (cftr)
Transporters [BR:
rtp02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
109925496 (cftr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
CFTR_R
ABC_tran
AAA_21
SMC_N
AAA_29
DUF87
RsgA_GTPase
MeaB
AAA_16
MMR_HSR1
nSTAND3
NB-ARC
FtsK_SpoIIIE
NTPase_1
T2SSE
Zeta_toxin
DO-GTPase2
nSTAND1
ATP-synt_ab
AAA_30
Motif
Other DBs
NCBI-GeneID:
109925496
NCBI-ProteinID:
XP_020381025
LinkDB
All DBs
Position
18:32489159..32602367
Genome browser
AA seq
1489 aa
AA seq
DB search
MQRSPIEKANAFSKLFFRWPRPILKKGYRQKLELSDIYQIPSSDSADELSEMLEREWDRE
LATSKKNPKLVNALRRCFFWRFLSYGILLYFVEFTKAVQPLCLGRIIASYNVRNTYEREI
AYYLALGLCLLFVVRTLFLHPAVFGLQHLGMQMRIALYSLIYKKILKMSSRVLDKIDTGQ
LVSLLSNNLNKFDEGVAVAHYVWIAPVQVVLLMGLLWNELTEFAFCGLGFVIMLALFQAW
LGKKMMQYRDKRAGKINERLAITSEIIDNIQSVKVYCWEDAMEKIIDNIRQAELKLTRKV
AYCRYFSSSAFFFSGFFVVFLSVVPYAFTHTIKLRRIFTTISYNVVLRMTVTRQFPSAIQ
TWYDSLGAIRKIQDFLHKDEHKTVEYNLTTKEVEMVNVTASWDEGIGELFEKVKQKDSEC
NMANGDDGLFFSNFSLHVTPVLKNISFKLEKGELLAVAGSTGSGKSSLLMMIMGELEPSE
GKIKHSGRISFSPQVPWIMPGTIKENIIFGLSYDEYRYTSVINACQLEEDITVFANKDKT
VLGDGGITLSGGQRARISLARALYKDADLYLLDSPFSHLDVTTEKNIFESCLCKLMVNKI
RILVTSKLEHLKKADKILLLHEGRCYFYGTFSELQGEKPDFSSQLLGSEGFDSFSAERRN
SILTETLRRCSVSSGDGAGLGSFNETRKASFKQPPTEFSEKRKSSLIINPITSNKKFSLI
QTAMPHAQANGIEDAISEPNERHFSLIPENELGEPTQPRSNIFKSEVPFQAHRRQSVLAL
MTNSSTSPNKIHARRNTVRKMSMVSQANYASSEIDIYSRRLSEDGSFEISEEINEEDLKE
CFVDEEEIRNVTTTWSTYLRYVTINRNLIFVLILCLVIFLAEVAASLVGLWIVTGLAEDT
GSQTNDSSTDLSQLTVFSNFITNGSYYYIFYIYVGLADSFLALGVIRGLPLVHTLVTVSK
DLHKRMLHSVLQAPMTVFNQMKTGRILNRFIKDTAIIDDMLPLTAFDFVQLILIVVGAIG
VVSVLQPYTLLAAIPVAVTFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLRGLWTVR
AFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIVFVLFFIAITFISIATHNVGE
GEVGIILTLAMNITSTLQWAVNSSIDVDSLMRSVSRVFKYIDIPPEGSETKNQRNPSNVL
VIENKYVANEWPSGGQMMVNNLTAKYTNDGRPVLQDLSFSVNAGQRVGLLGRTGAGKSTL
LSALLRLLSTEGEIQIDGISWNSVSLQKWRKAFGVIPQKVFVFSGTFRKNLDPYEQWSDE
EIWKATEEVGLKSMIEQFPDNLNFVLVDGGYILSNGHKQLMCLARSILSKAKILLLDEPT
AHLDPVTFQIIRKTLKNTFSNCTVILSEHRVEALLECQQFLVIEGCSVKQFDALQKLLTE
ASLFKQVFGHLDRAKLFSAHRRNSSKRKTRPKISALQEEAEEDLQETRL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgcagagatcacccatagaaaaagcaaatgccttctccaaactcttcttcaggtggcca
agacccattttgaaaaaaggctacagacagaaactggaactgtcagacatctatcagatt
ccttcatctgactctgcagatgaactttccgagatgttagaaagagaatgggacagagag
ttagcaacatcaaagaaaaatcccaaacttgtcaatgcacttcgccgatgttttttctgg
aggtttctgtcttatggaattctgctttattttgtggaattcacgaaagctgtacagcct
ctgtgccttgggcgaataatcgcatcgtataatgtgagaaatacttatgagcgtgaaata
gcctactaccttgccttaggcctctgcctcctgtttgttgtaaggactctctttctacat
cctgctgtctttggtctccagcaccttgggatgcagatgagaatagcgttgtacagttta
atttataaaaagatcttaaaaatgtcaagcagagtacttgataaaattgatactggacaa
cttgttagtctcctatccaacaacctcaataaatttgatgagggcgtggcagttgcccac
tacgtctggattgcaccagtccaagtagttcttttaatgggattgctctggaatgaattg
acagaatttgcattttgtggattgggtttcgtaataatgcttgcccttttccaagcctgg
ctggggaagaagatgatgcaatatagagacaaacgtgcaggaaaaataaatgaacgactt
gcaatcacctctgaaattattgacaatattcagtcagtgaaggtgtactgctgggaggat
gctatggaaaagattattgataacataaggcaggctgaactaaagctgaccagaaaagtt
gcctactgcagatacttcagtagttcagctttctttttctcaggcttttttgttgtgttt
ctgtctgtggtgccttatgctttcactcataccataaaactgcggaggatattcaccact
atttcatacaacgttgtccttcgaatgacagtcaccagacaatttccatcagctatacaa
acatggtatgattctttgggagctatacgtaaaatacaggacttcttacacaaagatgaa
cacaaaactgtggaatacaacctaacaactaaagaggtcgagatggtaaatgtgacagct
tcttgggatgagggaattggtgagttgtttgaaaaggttaaacagaaggactccgagtgt
aacatggcaaatggagatgatggactgtttttcagtaatttctctttacacgttacacct
gtcctgaagaatatcagctttaaattagaaaaaggtgaactgctggctgtagctggatcc
acaggatctggaaagagctcactcttgatgatgataatgggagaattggagccttcagag
ggtaaaattaaacatagtggcagaatctccttctcacctcaggtgccctggatcatgcct
ggaacaattaaggaaaacatcatatttggactttcatacgatgagtacagatataccagt
gttatcaatgcatgtcagctcgaggaggatatcacagtgtttgctaacaaggataagact
gttctaggagatggagggattactctcagtggaggtcaacgggcaaggatctccttggca
agagctctatataaagatgctgatctgtatctactggattcacctttcagtcaccttgac
gtaactacagaaaagaacatatttgaaagttgtctttgtaaactgatggttaacaaaatt
cggatcctggtgacttcaaagctggaacatttgaagaaagccgataaaattctgctctta
cacgaaggacgctgctatttctacggaaccttttctgaacttcagggggagaagcctgac
ttcagttcccagctgctgggttctgagggtttcgatagctttagcgctgaaagaagaaac
tcaattctcaccgaaacccttcgtcggtgctccgtgtcctcaggtgacggggcaggtttg
ggaagcttcaacgaaactcgaaaagcatcatttaagcagccaccaacagaattcagcgaa
aaaaggaaatcttcgctgataatcaatccaataacgtcgaacaaaaaattttccctcata
caaacagctatgccacacgcacaggcaaatggtatagaagatgccataagtgagccaaat
gaaaggcatttttccctcattccagaaaatgaactaggagaacccacacaaccccggagt
aatatattcaaaagtgaggttccctttcaggcacataggcgacaatctgtgctggcactc
atgacaaactcttcaacgtctcccaacaagattcatgcacgacgcaacactgtacgcaaa
atgtccatggtttctcaagccaattatgcatcttctgagatagatatttactcaaggcgc
ttgtctgaagatggaagttttgaaattagtgaagaaataaatgaagaggatttgaaggaa
tgctttgttgatgaagaggaaatccgcaatgttacaaccacatggagcacttatctcaga
tatgttacaattaatcgcaacttgatatttgtcctcatcctttgccttgttatattttta
gcagaggtggctgcttctttggttggactttggatagttactggattggcggaagatact
ggctcacagaccaatgactcctcaacagacctctcccagctcactgtattttctaacttt
attaccaatggcagctattattatatattttatatctatgtgggacttgcagacagtttc
cttgcacttggggttattcgaggtctgcctctggtccacactcttgttactgtctccaag
gacctgcataagcgaatgttgcattcagttctccaagctcccatgactgtgttcaaccaa
atgaagacaggcagaattctaaatcgtttcatcaaagacactgcaataatagatgacatg
ttgccactcaccgcttttgactttgtgcagttgatacttattgttgtgggggccattggt
gtggtatctgtgttacaaccctacactctcttggctgcaattcctgtggcagttactttc
atcatgttgagagcctattttctgcgtacatcacagcaactgaagcaactggaatctgaa
gctcgcagccctattttcagccatctcatcacatccttgagaggactgtggacagtaaga
gcatttggccgacagtcttactttgaaacactttttcacaaggctctgaaccttcatact
gcaaactggtttctctacctttcaacactgcgttggtttcagatgaggattgacattgta
tttgtcctcttcttcattgcaattactttcatctccatagcaacacacaatgtcggggaa
ggagaagttggaattatcctcaccttagccatgaacatcacaagcactctgcagtgggct
gtcaattcaagcatagacgtggatagtctgatgaggtctgtaagtcgcgtttttaaatac
attgacatacccccggaaggatctgaaaccaagaaccaacgtaacccctccaatgtgctt
gtaattgaaaacaaatatgttgccaatgaatggccctctggaggccaaatgatggtaaac
aaccttacagccaaatataccaatgatggacgcccagtactgcaggatctctccttctca
gtaaatgcaggacaacgggttggattgttgggacgaacaggtgctggaaaaagcacatta
ctttctgctcttttgcgtctcttgtctactgaaggggaaattcagattgatgggatatcc
tggaattcagtctctttgcaaaaatggagaaaagcatttggcgtcattccacagaaagtc
tttgtgttctctggaaccttccggaagaacttggatccttatgaacagtggagtgatgag
gaaatctggaaagccactgaagaggtgggcttgaaatcaatgatcgagcaatttccagat
aatcttaattttgttttggtggatggtggttatatcctcagcaatggtcataaacagctc
atgtgtttggctcgatcgattctcagcaaggctaaaatcctacttctggatgaacctact
gctcatctggaccctgtaacattccaaatcataaggaaaacacttaaaaatacattttca
aactgcactgtaatactgtcagaacatagagtggaagctctccttgaatgccagcaattt
ctggtaattgaaggatgttcagttaaacagtttgatgctctgcagaaacttttaactgaa
gcaagccttttcaagcaagtttttggacatttggaccgtgcaaagctattttctgctcac
agaaggaactcaagcaaaaggaagacacggccaaaaataagtgccttacaggaggaggca
gaggaagatcttcaagaaacaaggttataa
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integrated database retrieval system
