Rhincodon typus (whale shark): 109930123
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Entry
109930123 CDS
T06055
Symbol
sec24c
Name
(RefSeq) protein transport protein Sec24C
KO
K14007
protein transport protein SEC24
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109930123 (sec24c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rtp04131
]
109930123 (sec24c)
Membrane trafficking [BR:
rtp04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
109930123 (sec24c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
109930123
NCBI-ProteinID:
XP_048472239
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Position
34:24568046..24635730
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AA seq
1108 aa
AA seq
DB search
MNQQGHMASYGQPQPGYQGYQQFGYNSQHTAGVPTSQYGPYNGPVQGYQPTAVPQGPLRT
ASGAPPTSLPPSTAAQSTAYNQYGQGDVQNGPAMSDQSHRFPVSQPYMPGSHPMPYQQYA
PLHSTAQQLPNQMAAMQISGSTNNAPPPASQSYGPPASHHQTAPSFPPTGLGSYTQYPTP
LQNIPSSVPQGGNPPQHPFPGQPVPVSTFTSPPTSTGLTGSALPPPPGVPRPPAMHGPPL
SGQPQTGLPPSQPPTGHYPPQLNHRPTGPQSGMPGVVTGPPTQGFQAHPTQPSQGLIPQQ
NGSFGQVRSPQPNFAAPYTGAPSYTSQPQPQQKRLDPDSIPSPIQVIEDDKSNRGTEPFS
TGVRGQVPPLVTTDFVVKDQGNASPRFIRCAAYNLPCTSDMAKQCQVPLTAVIKPLATLP
ADEAPPYIVDHGETGPIRCNRCKAYMCPYMQFIEGGRKFQCAFCSCVSEVLPHYFQHLDH
TGKRMDCYDRPELSLGSYEFLATVDYCKNNKIPNPPAFIFMIDVSYNALKSGLVHLLCEE
LKTLLDYFPREGNAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDIADMFVPLLDG
FLVNVNESRAVINSLLEQIPEMFADTRETETVFGPVIQAGLEALKAAECAGKLFIFHSTL
PLAEAPGKLKNRDDKKLINTDKEKVLFQPQTSFYNNLAKECVAQGCCVDLFLFPNQYVDV
ATLGLVTYQTGGSIYKYTFFQAQADGERFLNDLHRDVRKVIGFDAVMRVRTSTGIRATDF
FGSFYMSNTTDVELAALDCDKAITVEFKHDDKLNEDAGAQIQCALLYTSCSGQRRLRIHN
LSLNCCTQLADLYRNCETDTLINYFVKLAYRGVLSNPTKTVRENLINQSAQILACYRKNC
ASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGTEVSIDDRTYVRQLVTSMDVAETNVF
FYPRLLPVHKMDMDSDDFPVAIRCSEERLSKGGIYLLENGLSLFIWVGMNTQHDLIQSIF
NVQSFGQIDSAMTALPMLDNAYSKKLRSIVDMIRAQRPRFMKLMIVKQDDKMELLFKHFL
MEDKSVNGGASYVDFLCHMHKEIRQLLS
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaacagggtcacatggcatcttatgggcagccccaacctggttaccaagggtac
caacagttcggatacaacagtcagcatacggcaggtgttccaacctctcaatatggacca
tataatggacctgttcaaggttaccaaccaactgctgttccacaaggaccattaaggaca
gcatcgggtgcacccccaacctcattacctccctcaacagctgcacaatcgacagcctac
aaccagtacggacagggggatgtacagaatggtcctgcaatgtctgaccagtcacacagg
tttccagtctctcaaccatacatgcctggtagtcatccgatgccatatcaacaatatgca
cccctgcacagtaccgcacaacagttaccaaatcaaatggcagcgatgcagatcagtggt
tctacaaataatgcaccaccacctgccagtcagagttacgggccaccagcttctcatcat
caaacagcaccaagttttccgcccaccggtctaggatcgtacacgcaatatcctactcca
ctacagaatattccctcaagcgtgcctcagggtggtaaccctccccaacatccctttcct
gggcaaccagtcccagtgtcaaccttcacctcgcctcccacatctacaggtttgactggc
tcagctctccctcctccacctggggtgccaagacccccagcaatgcatggaccaccactg
tctggacagcctcagacaggccttcccccatcccagcctccgactggacattacccaccc
caactgaatcacagacccacaggtcctcagtctggtatgccaggagtagtgactggtcca
ccaactcagggctttcaagcgcatccaactcaacctagtcagggacttatacctcaacag
aatggttcttttggacaagtgaggtcaccccagccgaactttgctgcaccttacactgga
gcaccaagttacaccagtcaaccccaaccacaacagaaaaggctggacccagatagcatt
cctagcccaattcaagtgattgaagatgataagtcaaacagaggaactgaaccattctcg
accggtgtgcgaggtcaagttccaccacttgttactactgactttgtggtaaaagatcaa
gggaatgcaagtcctcgatttattcgatgtgcagcttataatcttccttgcacttcagat
atggcaaagcaatgccaagttccccttactgcagtcattaaaccacttgctacattacca
gctgatgaggcacccccttatatcgtggaccatggcgagactggtccaattaggtgcaat
agatgcaaggcttacatgtgcccctatatgcagtttattgaaggtggacggaagttccag
tgtgcattctgcagctgtgtctctgaagtactgcctcactatttccaacatttggatcac
accggcaagcgaatggactgctatgaccgaccagaactgtcgcttggttcctatgagttt
ttagctactgtagactactgcaagaacaacaaaatccctaatccacctgctttcatcttt
atgattgatgtgtcttacaatgcactgaagagtggactagttcacctgctatgtgaggaa
cttaaaactctattggattacttcccaagggagggcaatgcagaagaatcagcaataaga
gttggatttgtaacttacaataaagttctgcatttttacaatgtgaaaagctcattggcc
cagccacagatgatggtggtgtctgacattgctgacatgtttgtcccattgcttgatgga
ttcctggttaatgtcaatgaatcacgggctgtgataaacagtttgttggaacagattcct
gagatgtttgctgatacaagagagactgaaactgtgtttggaccagtcattcaggctggt
ttggaggctcttaaggcagcagagtgtgctggtaaattgttcatatttcactcaaccttg
cctttggctgaagcacctggaaaattgaagaatagagatgacaagaagcttattaacaca
gataaggaaaaagttctgtttcaacctcagactagcttctacaataatttggccaaggaa
tgtgtggcacaaggctgctgtgtggatctcttcctattccccaatcagtatgtggatgtg
gctactttagggttggtaacttaccaaactggaggttccatttacaagtacacatttttc
caggcacaagcagatggggagcgcttcctaaatgatctacacagagatgtccgaaaagtg
attgggtttgacgcagtgatgagggtgcgcaccagcacagggattcgagcaactgatttc
tttggctctttctacatgagtaatacaactgatgttgagctggctgcattagactgtgat
aaagctatcactgtggagttcaaacatgacgacaagttgaatgaagatgctggagctcag
attcaatgtgctttgctctataccagttgcagtggacagaggaggttacgtatacacaac
ctgtctcttaattgttgtactcagcttgctgatttataccgaaactgtgaaactgacaca
cttatcaactactttgtgaaactagcatatcgtggcgtcctgagcaatcccacaaagact
gtgcgtgaaaacctaattaaccagtctgctcagattcttgcatgctaccgtaagaattgt
gcaagtccatcatcagctggacagctgatcctgcctgagtgcatgaagctgttgcctgtc
tacctgaactgtgtattgaagagtgatgtcctgcagcctggaactgaggtctccattgat
gaccgcacctatgttcggcaacttgtcacatccatggatgtagcagaaaccaacgtgttc
ttctatcctaggcttttacctgtgcacaaaatggatatggatagtgatgatttcccagtg
gccattcgttgctcagaggagcgattatcaaagggtggtatttacctgttggaaaatgga
ttgagcctcttcatttgggttgggatgaacacacagcatgacctcattcagagtatcttt
aatgtgcagtcatttggacagattgattccgcaatgactgctctaccaatgctggataat
gcttactcaaaaaaattacggtccatagttgatatgatacgtgctcagaggcccaggttt
atgaagctcatgattgtgaagcaagacgacaaaatggagctgctgttcaaacacttcctc
atggaggataagagtgtgaatggtggagcctcatacgtggactttctctgccacatgcac
aaagagattcgacagctactcagctaa
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