Rhizobium tropici: RTCIAT899_CH11290
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Entry
RTCIAT899_CH11290 CDS
T02432
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03030
DNA replication
rtr03410
Base excision repair
rtr03420
Nucleotide excision repair
rtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RTCIAT899_CH11290 (ligA)
03410 Base excision repair
RTCIAT899_CH11290 (ligA)
03420 Nucleotide excision repair
RTCIAT899_CH11290 (ligA)
03430 Mismatch repair
RTCIAT899_CH11290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtr03032
]
RTCIAT899_CH11290 (ligA)
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_CH11290 (ligA)
Enzymes [BR:
rtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RTCIAT899_CH11290 (ligA)
DNA replication proteins [BR:
rtr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RTCIAT899_CH11290 (ligA)
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RTCIAT899_CH11290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RTCIAT899_CH11290 (ligA)
MMR (mismatch excision repair)
DNA ligase
RTCIAT899_CH11290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RTCIAT899_CH11290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
RNA_ligase
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AGB71639
LinkDB
All DBs
Position
complement(2278193..2280343)
Genome browser
AA seq
716 aa
AA seq
DB search
MSTEQKPVEDLSEEEAAAALAYLAAEIARNDALYHGKDAPEISDAEYDALKRRNDAIEAR
FPALIRADSSSRRVGAAPSETFAPVVHARPMLSLDNTFSQEDVEDFVASVYRFLGRLPDN
SIAFTAEPKIDGLSMSIRYENGRMVSAATRGDGTTGENVTANIRTIKEIPQTLPAGAPSV
VEVRGEVYMAKSDFLALNVQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSDMPADTQYGMVQTFKSWGFPVNPLMERLNSVADILAHYDQIGLQRPDLDYDIDGVV
YKVDSLELQARLGFRSRSPRWATAHKFPAEQAFTRLVGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNADYIKGIGNKGELIRDGRDIRVGDMVIVQRAGDVIPQIVDVVLEKREA
SSAPYEFPKICPVCGSHAVRDINEKTGKVDAVTRCTGGFICRAQATEHLKHFVSRNAYDI
EGLGSKQIDFFFESEDPALQIKTAPDIFTLEKRQQTSLTKLENIDGFGKVSVGKLYAAIN
ERRQIALHRFIFALGIRHVGETTAKLLARSYGTYAAFEAGMKEAAPLSGDAWNDLNNIEG
IGEVVARAIVEFYKEPRNTEVIAKLLEEVQPQEAEQPVTSGSPVAGKTVVFTGSLEKFTR
DEAKAKAESLGAKVSGSVSKKTDIVVAGPGAGSKLDKAREFNVQVMTEDEWLDLIG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgaacagaagcccgtggaagatttgagcgaagaggaagcggccgcagcgctt
gcctatctggctgcagagatcgcgcgcaacgacgcgctttatcatggcaaggatgcgccg
gagatttcggatgccgagtatgatgcgctgaagcggcgcaatgatgcgatcgaggctcgg
tttcccgcattgattcgcgctgatagctcatcacgccgggtcggtgccgcaccctcggag
acctttgcgcctgtcgtccacgccaggccaatgctctcgttggacaacaccttctcgcag
gaagatgtcgaggatttcgtcgccagcgtctatcgctttctcggtcgcctgcctgacaat
tccattgccttcacggcggagccgaagatcgacggtctttccatgtccatccgctacgag
aacggccgcatggtgagcgccgcgacgcgcggtgacggcacgacaggtgagaatgtcacc
gccaatatcaggaccatcaaggaaatccctcagaccttgccagcgggcgctccctcggtc
gtcgaggtgcgcggtgaggtctatatggccaagagcgacttcctggcgctcaacgtgcag
atggaggccgagggtaagcagacctatgtcaatcctcgcaatacggccgccggatcgctg
cgccagctcgacgcgaaggtgacggccagccgcaagctgaagttctttgcctatgcctgg
ggcgagatgtccgacatgccggcggatacgcaatacggcatggtgcagaccttcaaatcc
tggggctttcccgtcaacccgttgatggaacgcttgaattcggttgccgatattctcgcg
cattacgatcagatagggctgcaacggcccgatctcgattacgatatcgatggcgtcgtc
tacaaggtcgatagcctggaactgcaggctcgccttggtttccgctcccgctcgccgcgc
tgggcgaccgcgcataaatttccggcggaacaggcattcacgcgtttggtcggtatcgat
atccaggtcggccgcaccggcgcgcttacgccggtcgcgcgcctcgagccgatcaccgtc
ggcggcgtcgtggtgaccaatgcgacgcttcacaatgccgactacatcaagggcatcggc
aacaagggcgagctgatccgcgatggccgcgatattcgtgtcggcgacatggtgatcgtc
cagcgcgcaggcgatgtcatcccgcagatcgtcgatgtcgtgctggaaaagcgggaagcc
tcgagcgcgccctatgaattccccaaaatctgcccggtttgcggaagccacgcggtgcgc
gatatcaatgagaagaccggtaaggtcgatgccgtcacacgttgcactggcgggttcatc
tgccgggcgcaggcgacggagcatctcaagcatttcgtttcgcgcaatgcctatgacatc
gagggtctgggctcgaagcagatcgatttcttctttgagagcgaggatccggcgctacag
ataaagactgcgcctgacatcttcaccttggaaaagcgccagcagacgtcactgacgaag
ctggaaaatatcgatggtttcggcaaggtcagtgttggcaagctttatgccgcgatcaat
gagcggcgccagatcgccctgcatcgcttcatcttcgcgctcggtattcgccatgtcggc
gagacgacggcaaagcttctggcgcggtcctacggcacttatgcggccttcgaggcaggg
atgaaagaagcagcaccccttagcggggatgcgtggaacgacctcaacaatatcgagggc
atcggcgaggtagtggcgcgcgccatcgtcgaattctataaggagccgcgcaatactgag
gtcatcgcgaagctcctggaggaggtgcagccgcaggaggccgagcaaccggtgacttcg
ggcagtccggtggccggcaagaccgtcgtctttaccggctctctggaaaaattcacccgc
gacgaagccaaggcgaaggccgagagcctgggcgcaaaggtttccggctccgtgtcgaag
aagaccgatatcgtcgtggcagggccgggcgccggctcgaagctggataaggcgcgcgag
ttcaatgtccaggtcatgaccgaggacgagtggctggatttgatcggctga
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