Rhizobium tropici: RTCIAT899_PC09420
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Entry
RTCIAT899_PC09420 CDS
T02432
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RTCIAT899_PC09420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_PC09420
Enzymes [BR:
rtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RTCIAT899_PC09420
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RTCIAT899_PC09420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGB75670
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All DBs
Position
pRtrCIAT899c:2025945..2028521
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AA seq
858 aa
AA seq
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MALETYNRKRDFSRTTEPRGRAGKKKIAISGNSYVIQKHDARRLHYDFRLELDGVLKSWA
VTKGPSLIVGEKRLAVQTEDHPLEYGDFEGTIPKGEYGGGTVIVWDKGSWTPLGDPHKGL
AKGHLEFELHGKKLGGRWHLIRMAGKPREKRENWLLIKGEDEAARPEGAADILEERPESA
KTGRIIDEVENEKPGWSSKSGKIRRRTSRKKDDDAKEEADKAETQTDATPVDPSSLKGAL
KAPLPSFVEPALATLVSKPPSGSRWLHEIKFDGYRLEVRIEAGRIKLLTRSGLDWSQKFG
KEIVSAFRDLPVGTAIIDGELVVEPAAGASDFSALQADLSEGRSDRFVFYAFDLLYLDGY
DLKASPLIGRKELLRKIIPSETGILRFSSHFDENGDLLLSHACRLSLEGIVSKIANDPYR
PGRGKSWVKSKCSSRQEFVIGGWVPSTTSRKAIGSLVLGVYQDGKLEHVGRVGTGYTHTV
AEQLFKRLTRLQVKENPFATKLTAEEHRGVRFVQPELVAEVEFRAWTADGHLRHASFRGL
REDKNPLEIVRETPKSTRESSAEKPARSSVSLTHGDRLYWPDEGVTKAGLADYYAEVWRY
MGPFVVGRPLALVRCPNGIAGQHFFQKHAWKGMNRNIALAKDPQDEEPYVSIDDLNGLIG
LVQAAVLEIHPWGSMIGNWEKPDMIIMDLDPGPDVAWSKVIAAAEETAERLRQTGLVPFV
KTSGGKGLHIVCPLVARAEWPAVKAFTKGIADAMAADSPDRYVSTITKSKRRGKILIDYL
RNQRGSTAVAPYSTRARPGAAVSMPLLWEELSPAIGPDYFTVLNVPTRLAALHSDPWADF
RKAAEPLPQPAAKAKRKL
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggcattggagacctacaaccgcaaacgcgacttcagcaggacaaccgagccgagagga
cgagccggcaagaaaaagatcgcaatatccggcaacagctacgtcatccagaagcatgac
gcgcgccggctccactatgattttcgcctcgaattggacggagttttgaagagctgggcc
gtgaccaaagggccgagcctgatagtcggagaaaaacggctcgcggtgcagaccgaagat
cacccactggagtatggtgatttcgaaggcacgatccccaagggcgaatatggcggcggg
accgtcatcgtctgggacaagggctcttggacgccgcttggcgacccccataagggcctt
gcaaagggacatctcgaattcgagctccacggaaagaaactcggcggccggtggcatctg
atccgcatggcgggaaagccacgcgagaagcgggaaaactggctgctgatcaaaggcgaa
gacgaggcggcccgcccggaaggcgctgccgatattctcgaggaacgaccggaatcggca
aaaacggggcgtattatagacgaagtcgagaacgaaaagccgggctggtcttcgaagagc
gggaagatccgtcgcaggaccagccgaaagaaggatgatgacgccaaggaggaagccgac
aaagccgaaacgcaaacggatgcaacgcccgttgatccctcatctttgaagggtgccctc
aaggctcctctgccgtccttcgtcgaacctgctttggcgacattggtatccaaaccacct
tcgggctcccggtggcttcacgaaatcaaattcgatggctatcggctcgaggtccgcatc
gaggcaggccgcatcaagctgctgacacgcagcggcctcgactggagccagaaattcggc
aaggagattgtcagcgccttccgggatctccccgtcggcaccgcaatcatcgacggcgag
ctggtcgttgagccggcggccggcgcttccgatttctctgccctgcaggcggatctcagc
gaaggccgtagcgaccgcttcgtcttctatgctttcgatctcctctatctggacggatac
gacctgaaggcctcgcctctgatcggccgcaaggaattgctgcggaagatcatcccatcc
gaaaccgggatccttcgcttcagcagtcatttcgatgaaaatggcgacctgctgttgtcg
catgcctgcaggttgagcctggaagggatcgtatcgaagattgccaacgatccatatcgc
cccggccgcggcaagtcatgggtgaaatcaaaatgttcgtctcggcaggaattcgtgatc
ggcggctgggtcccatcgacaacgtcacgaaaggcgatcggctcgctggtgctcggcgtc
tatcaagacggcaagctcgaacatgtcggccgcgtcggtacgggatacacgcacactgtc
gccgagcagctcttcaaaaggctaacccgcctgcaagtgaaggaaaatcctttcgcaacc
aagctcaccgcggaagagcatcgcggtgtccgcttcgtgcagcccgaactggttgcggaa
gtcgaatttcgcgcctggacggcggacggccatttgcgccacgcctccttccgcggattg
cgagaagacaagaacccgctcgaaatcgttcgcgaaacaccgaaatccacgagggagtcc
tcagctgagaagccggcgcgcagcagcgtatccttgacccacggcgatcgcctctattgg
cctgacgaaggtgttacgaaggcggggcttgcggattattatgccgaggtctggcgttat
atggggcctttcgtcgtcggccggccgctcgcgctggtacgctgtcccaacgggattgcc
ggtcagcattttttccagaagcatgcctggaagggcatgaaccggaacatcgccttggcg
aaagatccgcaagacgaagagccctatgtcagcatcgacgacctgaatggcctgatcggc
ctcgtgcaggcagcagtcctcgaaatccatccctggggatcgatgatcggcaactgggaa
aagcccgacatgatcatcatggacctcgatccgggcccagacgtcgcctggagcaaagtc
atcgccgccgcggaagaaacggcagaacggctgaggcaaacagggctcgttcctttcgtg
aaaacttcgggcggaaaagggctgcacattgtctgcccgctggttgccagggccgaatgg
ccagcggtcaaggcctttaccaagggtatcgccgacgccatggccgccgacagccccgat
cgttatgtttccaccatcaccaagtcgaaacgccgcggcaagatcctgatcgattatctg
agaaatcaacgcggctcgactgccgtcgcgccctactccacccgcgcccggccgggcgcc
gccgtctcgatgcctttattatgggaggagctgagcccggcaatagggccggactatttt
accgtgctcaatgtgccgacgcggcttgccgcgctccattcggatccctgggccgacttc
cggaaagccgccgaaccgttgccccagcccgccgcgaaggccaagcgtaagttataa
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