Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I02039
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Entry
RBI_I02039 CDS
T03158
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rus
Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03030
DNA replication
rus03410
Base excision repair
rus03420
Nucleotide excision repair
rus03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBI_I02039 (polA)
03410 Base excision repair
RBI_I02039 (polA)
03420 Nucleotide excision repair
RBI_I02039 (polA)
03440 Homologous recombination
RBI_I02039 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rus03032
]
RBI_I02039 (polA)
03400 DNA repair and recombination proteins [BR:
rus03400
]
RBI_I02039 (polA)
Enzymes [BR:
rus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RBI_I02039 (polA)
DNA replication proteins [BR:
rus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBI_I02039 (polA)
DNA repair and recombination proteins [BR:
rus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RBI_I02039 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBI_I02039 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_5
Motif
Other DBs
NCBI-ProteinID:
CCO05737
UniProt:
W0U6P8
LinkDB
All DBs
Position
I:complement(2197675..2200230)
Genome browser
AA seq
851 aa
AA seq
DB search
MKLLAIDGNSIMNRAFYGIKLLSNSKGQFTNALTGFMNIYLKEIGEVKPDCVAVAFDLKA
PTFRHKANAAYKANRKGMPEELAQQMPVIKELLGDLGIKIVQCEGYEADDILGTLSKAAA
DSGNECYILTGDRDSFQLVSDRVTVRLATTKETKIYTPDRIMEEYGVTPRQMIEVKALMG
DTSDNISGVKGIGEKTALSLIKQEGDVKTLYEHLADIKLTPSVRTKLENGHQDAIDSRFL
AEICLEAPVDKATEFYKLGEVDTEKTKALLADLEMMRLIDRLGLSGKAVESADSAVQESK
LKLSDLPKFEVKPLDESVISVLGKDKTAYFIFADNKLSILCNDVIYTTEDNAIITAFMGT
ACEKITFEGKTAHKFAFSNGTHLENLTFCCDLAGYLLNSQSSEYTAENLCLSYKCLYRSD
MGEYADLSSLPALSENLKKQLEMTEMTKLFDDIEMPLCEVLASMEFYGVKADAEGIKAFG
EDLKIKIDELTSQIYMYAGKEFNIASTKQLGEVLFEDLGLPAKKKTKSGYSTNADVLESL
MDKHPIVPLIVEYRTLTKLNSTYVDGLLKLIHPDGRVHSVFKQTETRTGRISSTEPNMQN
IPVRKEIGRNMRKFFVAEDGYTLLDADYSQIELRVLASVCGDKNMQEAFSEGRDIHTSTA
AQVFDIPEDFVTPEMRSAAKAVNFGIIYGIGAFSLSKDIGVTVAEAKRYIKNYLDNFPKV
SEFMDKTVDDGIKNGYVTTLFGRRRYIPELSASNKVLQAFGKRAAMNAPIQGAAADIIKI
AMVRVYKKLREEDLDARLILQVHDELIIEAAEKDKDRAEKILKDEMENAVKLAVPMTVDV
NSGRSWYEAKD
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgaaactactagccatagacggaaacagcataatgaacagggctttttacggaataaag
ctgctgtcaaattcaaagggacagttcacgaatgcccttacggggtttatgaatatttac
ctcaaggagataggcgaggtaaagcctgactgcgtggcagtggctttcgaccttaaagcc
cctactttcagacataaggcgaatgccgcatacaaagccaaccgaaagggtatgcctgag
gagcttgctcagcaaatgcctgttataaaagagcttttgggcgaccttggtataaagata
gtacagtgcgagggctatgaagcagacgatattcttggtacgctctcaaaagccgccgca
gattcaggcaacgagtgctatattctcactggtgacagggacagcttccagctcgtttcc
gaccgtgtgacagtacgccttgccaccacaaaggaaacaaagatatatacccctgacagg
ataatggaagaatacggcgttacccctcgtcagatgatcgaggtaaaggctcttatgggc
gatacctcagacaatatctcaggcgtaaagggcattggcgaaaagaccgccctttccctt
atcaagcaggagggcgatgtcaagaccctttatgaacacctcgcagatatcaagcttacc
ccgtctgtgcgcacaaagcttgaaaatggtcatcaggacgctatagacagccgcttcctt
gccgaaatatgtcttgaagcccctgttgataaagcaacagagttttataagctgggcgag
gttgataccgagaaaacaaaggctctccttgccgaccttgaaatgatgaggcttatagac
agattgggtcttagcggaaaagctgtggaaagcgctgacagcgcagtgcaggaaagcaag
ctaaagctttccgacctgcctaagtttgaggtcaagccacttgatgagagcgttatatct
gttctcggcaaggacaaaacagcgtattttatctttgccgacaataagctttctatcctc
tgtaacgatgttatctacaccaccgaggacaatgcaattatcacagcttttatgggaaca
gcctgcgaaaaaataacctttgagggcaaaactgcccataagtttgcgttctcaaatggc
actcaccttgaaaacctaactttctgctgtgaccttgcaggatatcttctcaattcacag
tcaagcgagtatacagcggaaaatctttgcctttcatataagtgcctttaccgctctgat
atgggggaatatgcagacctttcaagcctgcctgctcttagtgaaaatctgaaaaaacag
cttgaaatgacagaaatgacaaagctattcgacgatatcgaaatgccactttgcgaagtg
cttgcttcaatggagttttacggtgtaaaggctgacgcagagggcataaaggctttcggt
gaggacttgaaaataaagatagacgagcttacttcgcagatatatatgtatgcaggcaag
gagtttaatatagcttccacaaaacagcttggggaggtgcttttcgaggacttgggtctg
cctgcaaagaagaaaacaaagtcgggctattccaccaatgcggacgttcttgaaagcctt
atggacaagcaccctatcgtgcctcttattgttgaataccgcacactcacaaagctcaat
tccacctatgttgacggacttttgaagcttatccaccctgacggcagagtccattctgtt
ttcaagcagaccgaaacaagaacaggaaggatatcctccacagagcctaatatgcagaat
atccctgtgagaaaagagataggcaggaatatgcgtaaattctttgttgccgaggacggc
tatactcttcttgacgctgactacagccagatcgagcttagagtgcttgcttccgtgtgc
ggtgacaaaaatatgcaggaagctttctcagagggcagagatatccatacctcaacggcg
gcacaggtctttgatatcccagaggatttcgtcacacctgaaatgagaagtgcggcaaag
gctgtaaactttggtataatctatggcataggtgcattttctctgtcaaaggatatcggc
gtgaccgttgcggaagcaaaaagatacatcaagaattatcttgacaacttcccgaaagta
tctgaatttatggataagacagttgatgacggcataaaaaacggctatgtcaccaccctt
ttcggcagaagaagatatatccctgagctttctgcttcaaacaaggtcttgcaggctttt
ggaaagagggcggcaatgaacgcacctatccaaggtgcggcggctgatatcataaagata
gcgatggtaagagtatacaaaaagcttagagaagaagatcttgacgcaaggcttattttg
caggtgcatgacgagcttattatagaagcggctgaaaaagacaaggacagagccgaaaag
atactcaaagatgaaatggagaacgctgtaaagcttgctgtgccaatgacagtggacgta
aacagcggcagaagctggtacgaagcgaaagactga
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