Rhodomicrobium vannielii: Rvan_1264
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Entry
Rvan_1264 CDS
T01353
Name
(GenBank) Peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
rva
Rhodomicrobium vannielii
Brite
KEGG Orthology (KO) [BR:
rva00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rva01002
]
Rvan_1264
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rva01011
]
Rvan_1264
Peptidases and inhibitors [BR:
rva01002
]
Cysteine peptidases
Family C82
Rvan_1264
Peptidoglycan biosynthesis and degradation proteins [BR:
rva01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Rvan_1264
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ADP70526
UniProt:
E3I576
LinkDB
All DBs
Position
1402277..1403563
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AA seq
428 aa
AA seq
DB search
MGMMKPRVMAAFVAAAFMVVVGSFGADAQRRGSSIDDWLGFDQSDDSWEQPMRDRAFQRE
WETQPERGFPTLAKENIATTKTAIKQYAEIVARGGWPQLPPIELRTGMSHPAVVQLRTRL
QVTGDLQAYGGYPEVFDSYVEQAVKRAQERHGIPPTGFLDQTTIEALNVPASARLRQLRT
NLARLQSLVPGTPAGKYVIVNIPAAQIEAVNNNQVISRHAGVVGKPDRPSPLLNSAIEEI
NFNKEWVVPPTVLKYDLVPKGRGGQDVLAKYKIDAYATHEDYQKGKKLDASQIDWSSDAP
LRYFYVQAPGDENPLGFAKINFASPQGVYMHDTPGQSVFQRSFRADSSGCIRVQNIHQLV
AWLLEDNGWSVQQVLRMKQSGERLFVRLKKRVPLYWTYITAWSTPDGTVQFRRDIYRKDG
VEAIASAY
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggggatgatgaaaccgagggtcatggctgctttcgttgcggccgccttcatggttgtc
gttgggtctttcggagcggacgctcagcgcaggggaagctcgatcgacgattggctcggc
tttgaccagtccgacgattcctgggaacagccgatgcgagatcgcgcctttcagcgtgag
tgggagacgcagcccgaacgcggcttcccgaccctcgccaaggaaaatatcgccaccacg
aagactgcgatcaagcaatatgccgagatcgtcgcgcgtggcggctggccgcaacttccg
ccaatcgaacttcgcaccgggatgagccatccggctgtcgtccagctccgcacacgtttg
caggtcacgggcgatcttcaggcctatggcggctatccggaggtgttcgactcctatgtc
gagcaggctgtgaagcgggcgcaggagcgtcatggcattccgcccacgggttttctcgac
cagacgacgattgaggcccttaacgtccccgctagcgcgcggctgcgccagctgcgcacc
aacctcgcgcggctccaaagcctcgtgccgggtacgcccgccggcaaatatgtgatcgtg
aacatcccggcggcgcagatcgaggctgtgaacaacaatcaggtcatttcccgacacgcg
ggcgtggtgggcaagccggaccggccgtcaccgctgttgaactcggcaatcgaagaaatc
aacttcaacaaggaatgggtggtgccgcccaccgtgttgaaatacgacctcgtgccgaag
ggccgtggcggtcaggatgtgctcgcgaagtacaagatcgacgcgtatgcaacccacgaa
gactatcagaagggcaaaaagctcgacgcgtcgcagatcgactggtcgtcggacgcgccg
ctccgttacttctatgtgcaagcgcccggcgacgagaacccgctcggtttcgcgaagatc
aacttcgcaagcccgcagggcgtctatatgcacgacacgcccggccagagcgtgttccag
aggagcttccgcgccgacagttcgggctgcattcgcgtgcagaacattcaccaactcgtg
gcttggctgctcgaagacaatggctggtcggtgcagcaggtgcttcgcatgaagcagtcg
ggcgagcgtctgttcgtgcggctcaagaagcgcgttccgctgtactggacctatattacg
gcctggtccacaccagatggaaccgtgcagttccgccgcgacatctaccgcaaggacggc
gtggaggcgattgcctcggcctactaa
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