Candidatus Rickettsiella viridis: RVIR1_12120
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Entry
RVIR1_12120 CDS
T05765
Symbol
rluD
Name
(GenBank) pseudouridine synthase
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
rvi
Candidatus Rickettsiella viridis
Brite
KEGG Orthology (KO) [BR:
rvi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rvi03009
]
RVIR1_12120 (rluD)
Enzymes [BR:
rvi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
RVIR1_12120 (rluD)
Ribosome biogenesis [BR:
rvi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
RVIR1_12120 (rluD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Motif
Other DBs
NCBI-ProteinID:
BBB15672
UniProt:
A0A2Z5V5H9
LinkDB
All DBs
Position
1285137..1286105
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AA seq
322 aa
AA seq
DB search
MKNTTQTVNYQVIVPEHLAEKRLDQILSALFPAYSRSRLQSWIRSQQILVDQQIKRPRDK
IKAGALITIAATLPEETKWEAQSIPLDIVYEDETLLVVNKPAGLVTHPAVGNPDKTLLNA
LLHHCPPLKQLPRAGIIHRLDKDTSGLLVIPKTLNAHTQLVKQLQARTIQRDYYAVVEGV
LISGGTVNAPIGRHPKLRKKMAVNTFSGKEAVSHYRVIERFAHHTLIKVQLETGRTHQIR
VHMAHIHHPLVGDKTYRGRLQLPKKAGPELISCLRQFSRQALHAEHLKLIHPLSQEVIEW
QAPLPEDMIKLINCLREDKKHA
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacacaacccaaacggttaattaccaggttattgtgcctgaacacttagccgaa
aaacgacttgaccaaattctgagtgcattattccctgcttattctcgatcccgcttgcaa
agctggattcgcagccaacagattttagtcgaccaacaaatcaaacgccctcgcgataaa
attaaggccggtgcgttgattactatcgccgccacgctgccagaagaaactaaatgggaa
gctcaatctatcccgcttgatattgtttatgaagatgaaaccttactggtagttaataaa
ccagcaggtttagtcacgcaccccgctgtaggcaaccctgacaaaacattgctcaatgca
ctattgcatcattgcccaccactaaaacaacttcctagagccggcatcattcatcggctt
gataaagacacatctggcttattagttattcctaaaacgttgaatgcccacacccaattg
gttaaacagcttcaggcgcggacgattcaaagagattattatgctgttgttgaaggcgtg
ttaatctcaggcggaacggtcaacgcccctattggcaggcatcctaaattgcgcaaaaaa
atggcggtcaataccttcagcggcaaagaagctgtttctcattaccgcgttattgagcgc
tttgctcaccatacgctcataaaagttcaactggaaacgggtcgtacccatcagatccgt
gtccatatggcacatattcatcatcccttagtcggtgataaaacctaccgcggtcgtctt
caattacccaaaaaagccggccccgaattgataagttgtttgcgacaattctctagacaa
gcgttgcatgccgagcatttaaaactgatccaccctctgtcgcaggaagtcattgaatgg
caagcaccgttaccagaagatatgattaagctaatcaattgcctgcgtgaagacaaaaaa
catgcttga
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