Saccharomonospora xinjiangensis: EYD13_12925
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Entry
EYD13_12925 CDS
T05928
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sacc
Saccharomonospora xinjiangensis
Brite
KEGG Orthology (KO) [BR:
sacc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sacc03016
]
EYD13_12925 (rtcB)
Enzymes [BR:
sacc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EYD13_12925 (rtcB)
Transfer RNA biogenesis [BR:
sacc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EYD13_12925 (rtcB)
Prokaryotic type
tRNA splicing ligases
EYD13_12925 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QBQ60938
UniProt:
A0A4P7C8Q6
LinkDB
All DBs
Position
complement(2796951..2798141)
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AA seq
396 aa
AA seq
DB search
MYTTIEGVRSDIRLWTDPATVEDAAMRQLRNVTTLPWIHGLAVMPDVHYGKGATVGSVIA
LRDAVSPSAVGVDIGCGMSAVRTSLTASGLPDDLGALRRRIEAAVPVGFDLHSNPVDPAT
VPGLGGWDAFWSAFSSLHPGVHSLLDRARRQIGTLGGGNHFIEVCLEQGGDDDGRVWLML
HSGSRGIGNELAKRHMDIARSLPHNADLPDRDLSVFVAGTPEMDAYRHDLYWAQEYAARN
RATMLALVQRALHKTVPGVRFEKPISCHHNYVAEEHYDGVDVMVTRKGAIRAGKGDLGII
PGSMGTGSYIVSGLGNEASFRSASHGAGRRMSRTKARKRFSAADLAEQTRGVECRKDAGV
VDEIPSAYKDIDAVIAAQTDLVEVVAHLKQVVCVKG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
gtgtacacgacgatcgagggagtccggtcggacattcgactgtggaccgacccggcgacg
gtggaggatgccgcgatgcggcaactccgcaacgtgaccacgctgccgtggatccacggg
cttgccgtgatgcccgacgttcactacgggaagggcgccacggtcggcagcgtcatcgcc
ctgcgcgacgcggtctcaccctcggccgtgggagtggacatcggctgcgggatgtcggcg
gtgcgcacctccctcaccgcatccggccttcctgacgacctcggcgcgctgcgccgccgc
atcgaagccgccgtgcccgtcggcttcgacctgcactcgaatccggtcgatccggccacg
gtgcccggcctcggcgggtgggacgcgttctggtcggcgttctcgtcgctgcatcccggc
gtgcactcgctgctcgatcgggcgcggcggcagatcggcacgctcggcggaggcaaccac
ttcatcgaggtgtgcctcgaacagggcggcgacgacgacggcagggtgtggctgatgctc
cactccggctcgcggggcatcggcaacgaactcgccaagcggcacatggacatcgcgagg
tcgctgccgcacaacgccgacctgcccgaccgtgatctctcggtgttcgtggccggaacc
cccgagatggacgcctaccggcacgacctgtactgggcgcaggagtacgcggcccgcaac
agggccacgatgctggcgctcgtgcagcgcgcgctgcacaagacggttcccggtgtccgg
ttcgagaagccgatctcgtgccaccacaactacgtcgccgaggaacactacgacggcgtc
gatgtcatggtgacccgcaagggcgcgatcagggcgggcaagggagatctcgggatcatt
cccggcagcatgggcaccgggtcctacatcgtgtccggactcggcaacgaggcgtccttc
cgctccgcctcccacggtgcgggacgaaggatgagccggacgaaggcgcgcaagcggttc
agcgccgccgacctcgccgagcagacgaggggagtcgagtgccgcaaggacgccggagtc
gttgacgagatcccttccgcgtacaaggacatcgacgcggtgatcgcggcacagaccgat
ctggtcgaggtggtcgcccacctcaagcaggtggtgtgcgtgaaggggtga
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