Stenotrophomonas acidaminiphila: AOT14_08490
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Entry
AOT14_08490 CDS
T04107
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sacz
Stenotrophomonas acidaminiphila
Pathway
sacz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AOT14_08490 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sacz03021
]
AOT14_08490 (rpoC)
03400 DNA repair and recombination proteins [BR:
sacz03400
]
AOT14_08490 (rpoC)
Enzymes [BR:
sacz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AOT14_08490 (rpoC)
Transcription machinery [BR:
sacz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AOT14_08490 (rpoC)
DNA repair and recombination proteins [BR:
sacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AOT14_08490 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ALJ27280
UniProt:
A0A0R0DSM9
LinkDB
All DBs
Position
962383..966606
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIGLASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTALERRQLLTEEQYLQARQEHGDDFDAAM
GAEAVYELLRTIDLQAEMVKLKEEIASTGSETKLKRLTKRIKLVEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEGEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLSRALINKKGEGMVFANTNEVKRAYDNR
VVELHAKVKVRITQVERDEQGNKVSKTSIQDTTVGRALLSEIMPEGLPFELCNTEMTKKN
ISRLINQSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILGEAEQE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMETIGTEKVEDGEGKLVDQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTVDGLTMTPIVEGGDVVEPLKDRVL
GRVVAEDVFLPGNDEDPIVTRNTLLDEAWVQKLEDAGVQSIKVRSTITCESSFGVCSRCY
GRDLARGHLVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSVK
FNNLKHVDHANGSLVAVSRSGEVSVLDAHGRERERYKLPYGATITVKDGAEIKAGQTVAN
WDPHNHPIVSEVAGFIRFIDFIDGVTVIEKTDELTGLASREITDPKRRGSQAKDLRPLVR
IVDGKGNDLTIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFE
GEHVSRGETIVDGEPSPQDILRLKGVEELARYLVKEIQDVYRLQGVKINDKHIEVISRQM
LRKVEIVDQGSSKFLNGEQAERQRVIEENAKLATRNELPARFEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTADNLRGLKENVIVGRLIPAGTGLAYHTKRRRGASGLTESE
IETLAGTAVIESEVAPAEAEQAAGGEE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcggcctggcttcgccggacctgatccgctcctggtccttcggcgaggtgaagaag
ccggaaaccatcaattaccgtaccttcaagccggaacgcgacggcctgttctgcgccgcc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtcgtgtgcgagaagtgcggcaccgaagtgaccctggccaaggtgcgccgcgag
cgcatgggccatatcgacctggcttcgccggtcgcccacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgaccgagccgggcctgaccgccctggaacgccgccagctgctg
accgaagagcagtacctgcaggcgcgccaggagcacggtgacgacttcgacgccgccatg
ggcgccgaggccgtgtacgaactgctgcgcaccatcgacctgcaggccgagatggtgaag
ctgaaggaggagatcgcctccaccggttcggaaaccaagctcaagcgcctgaccaagcgc
atcaagctggtcgaggccttcctggagtcgggcaaccgtccggaatggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgcccgctggttccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgctggagctcaacgctccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatcggttgacgccctgttggacaacggccgccgcggccgtgccatcaccggcaccaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcaccgtgggtccgtac
ctgaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaagccgttc
gtgttcgccaagctgcagcgtcgcggcctggccaccaccatcaaggccgccaagaagctg
gtcgagcgcgaggaaggcgaggtctgggacatcctggaagaagtcatccgcgagcatccg
gtgctgctgaaccgcgcgccgaccctgcaccgcctcggcatccaggcgttcgagccgctg
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctttcgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggacgtggtgttgggcctgtactacctcagccgcgccctgatcaacaag
aagggcgagggcatggtgttcgccaacaccaacgaagtgaagcgcgcctacgacaaccgc
gtggtcgagctgcacgccaaggtcaaggtgcgcatcacccaggtcgagcgcgacgagcag
ggcaacaaggtcagcaagacctcgatccaggacaccaccgtcggccgtgcgctgctgagc
gagatcatgcccgagggcctgccgttcgagctgtgcaacaccgagatgaccaagaagaac
atctcgcgcctgatcaaccagagctaccgcctgctcggcctgaaggacaccgtggtgttc
gccgacaagctgatgtacaccggctacgcctacgcgacccgcgccggcgtgtcgatcggc
atcgacgacatgctcatcccggacgagaagaagggcatcctgggcgaagccgagcaggaa
gtgctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctacaac
aaggtggtcgacatctggtcgcgtaccaacgagcgcatcgccaaggcgatgatggaaacc
atcggtaccgagaaggtcgaggatggcgagggcaagctggtcgaccagaagtcgatgaac
tcgctgtacatcatggccgactccggcgcccgtggtagccaggcgcagatccgccagctg
gccggcatgcgtggcctgatggcccgcccggacggctcgatcatcgagacgcccatcaag
gcgaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggtctggccgataccgcgctgaagaccgccaactccggttacctgacccgtcgcctg
gtcgacgtggcgcaggacgtggtgatcaccgaagtcgactgcggcaccgtcgacggcctg
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgaaggaccgcgtgctg
ggccgcgtcgtggccgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaacacgctgctcgacgaagcctgggtgcagaagctcgaggatgccggcgtccagtcg
atcaaggtgcgctcgaccatcacctgcgaaagctcgttcggcgtgtgctcgcgctgctac
ggccgcgacctggcccgtggccacctggtcaacatcggcgaagcggtcggcgtcatcgcc
gctcagtcgatcggcgagccgggtacccagctgaccatgcgtacgttccacatcggtggc
gcggcgtcgcgtgcggcggcggtggacaacatcaccgtcaagaccaccggttcggtgaag
ttcaacaacctcaagcacgtcgaccatgccaacggttcgctggtggcggtgtcgcgttcg
ggcgaagtgtcggtgctcgacgcccacggccgcgagcgcgagcgctacaagctgccgtac
ggtgccaccatcacggtcaaggacggtgccgagatcaaggctggccagaccgtggccaac
tgggatccgcacaaccacccgatcgtgtcggaagtggccggcttcatccgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgagctgaccggcctggcctcgcgc
gagatcaccgatcccaagcgccgtggttcgcaggccaaggatctgcgtccgctggtgcgc
atcgtcgatggcaagggcaacgacctgaccatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtcaacctgcaggatggcgccccggtgggcgtgggcgac
gtggtcgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaggcgcgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcatcatcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
accgatggttccgagcacgaggagctgattccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtcagccgcggtgaaaccatcgtggacggcgagccgagcccgcaggacatc
ctgcgcctgaagggcgtggaggagctggcgcgctacctggtcaaggaaatccaggacgtg
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatctcgcgccagatg
ctgcgcaaggtcgagatcgtcgaccagggcagcagcaagttcctcaatggcgagcaggcc
gagcgccagcgcgtgatcgaggaaaatgccaagctggcgacccgcaacgaactgccggcg
cgtttcgagccggtgctgctgggcatcaccaaggcctcgctggcgaccgagtcgttcatc
tcggccgcgtcgttccaggagaccacccgcgtgctgaccgaggcggccgtgcgcggcacc
gcggacaacctgcgcggcctgaaggaaaacgtcatcgtcggccgcctgattccggcgggt
accggccttgcgtaccacaccaagcgccgtcgcggcgcctccggcctgaccgagtcggag
atcgagaccctggccggtacggcggtgatcgagtcggaggttgcaccggctgaagctgaa
caggctgcaggcggcgaggaatga
DBGET
integrated database retrieval system
