Sagittula sp. P11: CDO87_10465
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Entry
CDO87_10465 CDS
T05219
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDO87_10465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sagu03400
]
CDO87_10465
Enzymes [BR:
sagu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CDO87_10465
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CDO87_10465
DNA repair and recombination proteins [BR:
sagu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CDO87_10465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
AUC53588
LinkDB
All DBs
Position
2140845..2141696
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AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLAPVMEGQVIARAQVNRPDLRWPFPERMAERLTGARVLQLRRRSKYI
LADLSTDETLLIHLGMSGRMLVSGDPLGQFVHAHPMPEKHDHVVFDMENGARVTFNDPRR
FGAMDLMPTQAAEAHPLLARIGPEPLSNAFTESHLVERLKGRNMPVKSALLDQKIVAGLG
NIYVCEALFRGGIHPARRCVRISAARISALVPIVRDVLDDAIAAGGSSLRDFRQADGELG
YFQHSFDVYGREGEPCRAPGCTSKIQRIVQSGRSSFFCPTCQR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaagtcgaaaccgtgcgccgcggtctggcccccgtcatggaaggc
caggtcatcgcgcgcgcacaggtcaaccggcccgacctccgctggccttttccagaacgg
atggccgaacggctgaccggggcgcgtgtcttgcagcttcgccggcggtcaaagtacatc
ctcgccgacctgtccacggacgaaaccctgctgatccacctcggtatgtccggacggatg
ctggtgtcgggcgatcccctcggccagttcgtgcacgcgcatcccatgccggagaaacac
gatcacgtcgtcttcgacatggagaacggcgcccgcgtcacgttcaacgatccgcgtcgc
ttcggcgccatggacctgatgcccacgcaggcggccgaggcgcacccgctgctcgcccgg
atcggtccggaaccgctgagcaatgccttcaccgaatcccacctcgtggagcgactcaag
gggcggaacatgccggtcaaatccgcgcttctggaccagaagatcgtcgccggactgggc
aacatatacgtttgtgaagcgctgttccgtggcggcatccatccggcgcgacgttgtgtc
cgcatctccgcggcgcggatttcggcgctggttcccatcgtccgcgacgtgctggacgac
gccatcgcggcgggcggatcatctctccgggatttccggcaagccgatggagaacttgga
tatttccagcacagctttgacgtctacggacgtgagggtgagccatgcagggcgcccggt
tgcaccagtaagatccagcgtatcgtgcagtcggggcggtcgtccttcttctgcccgacc
tgccaaagataa
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