Sagittula sp. P11: CDO87_19680
Help
Entry
CDO87_19680 CDS
T05219
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sagu
Sagittula sp. P11
Pathway
sagu03030
DNA replication
sagu03410
Base excision repair
sagu03420
Nucleotide excision repair
sagu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sagu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDO87_19680
03410 Base excision repair
CDO87_19680
03420 Nucleotide excision repair
CDO87_19680
03430 Mismatch repair
CDO87_19680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sagu03032
]
CDO87_19680
03400 DNA repair and recombination proteins [BR:
sagu03400
]
CDO87_19680
Enzymes [BR:
sagu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CDO87_19680
DNA replication proteins [BR:
sagu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CDO87_19680
DNA repair and recombination proteins [BR:
sagu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CDO87_19680
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDO87_19680
MMR (mismatch excision repair)
DNA ligase
CDO87_19680
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDO87_19680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AUC55246
LinkDB
All DBs
Position
4086022..4088136
Genome browser
AA seq
704 aa
AA seq
DB search
MSDTEVGQLTEDQAREELRALADILGQANRAYHAEDAPELSDAEYDRLKRRNAEIEARFP
ELKLADSPSEQVGAAPADGFSKVRHEVRMLSLANAFDDEDIRDFDDSIRRYLGLGADTSL
AFTAEPKIDGLSLALRYEKGKLVRAATRGDGSEGENVTANARTIDDIPTDLTGAPEVLEV
RGEVYMSHADFEALNERQAARGGKTFANPRNAAAGSLRQLDAKITAERPLKFFAYAWGVL
SDPLADTQKGAIDRLKALGFQTNPLTALCDGPEEMLDHYRKVEAQRATLGYDIDGVVYKV
NDLALQERLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV
VVSNATLHNEDYIAGRDSSGNEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSQRPDDAQ
PYVFPTECPECGSDAIREEGDAVRRCSGGLICPAQAVEKLKHFVGRSAFDIEGLGAKQVE
QFYADGWIKEPADIFTLRERYGSGIQQLKNREGWGEKSALNLFSAIDERRRIPLGRLIFG
LGIRHVGESASNLLARHYGTWATFEAAMKDAAPMEGEAWDDLLSIDGVGTVLAQSLVSAM
NQEAERASMDRLVAHLEVEEAARPDTEGSPVAGKTVVFTGTLERMTRAEAKARAEAMGAK
VSGSVSKKTDIVVVGPGAGSKEKKARELGLTVLDEDAWLELIGG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacagaggtcggtcagttgaccgaagatcaggcgcgcgaagagcttcgcgcg
cttgccgacattctgggacaggcgaaccgcgcgtatcatgccgaggatgcgcctgaactg
tcggacgccgaatacgaccgcctgaaacgtcgcaacgcggagatcgaggcgcgctttcca
gaactcaagctggccgacagcccgtcggagcaggtgggcgcggctccggcggacgggttt
tccaaggtccgtcacgaggtcaggatgctgtcgctggccaacgccttcgacgacgaggat
atccgcgacttcgacgacagcatccggcgctaccttggattgggcgcggacacgtcgctg
gccttcaccgcggaaccgaagatcgacgggctgtcgctggccttgcgctacgagaagggc
aagctggtgcgcgcggcgacccggggcgatggctccgaaggggagaacgtcaccgccaac
gcccggaccatcgacgacatccccaccgacctgaccggcgcgccggaggtgctggaggtc
cgcggcgaagtctacatgagccacgcggatttcgaggcgctgaacgaacggcaggccgcg
cgcgggggcaagacatttgccaacccgcgcaacgccgctgcggggtctttgcgccagctt
gatgcgaagatcaccgccgaacggcccctgaagttctttgcctatgcttggggcgtcctg
tccgatccgctggcggacactcagaagggcgccatcgatcggctcaaggccctgggtttc
cagaccaatccgctgacagcgctctgcgacgggccggaggagatgctggaccactaccgc
aaggtcgaggcgcagcgcgcaacgcttggctatgacatcgacggcgtggtctacaaggtg
aacgatctggccctgcaggaacggttgggcttccggtccaccacaccccgttgggccatc
gcccacaagttcccggcggaactggcatggacgcggctcgaagccatagacatccaggtc
gggcgcaccggcgcgctgtcgcccgtcgcccgcctgacgcccgtcacggtgggcggtgtg
gtggtgtcgaacgcgacgctgcacaacgaggattacatcgccggacgcgacagttcaggc
aacgagattcgcggcggcaaggacatccgcatcggcgactgggtccaggtctaccgcgca
ggcgatgtcatcccgaaggtggccgacgtcgacctgtcgcagcggccagacgatgcgcaa
ccctatgttttccctacggaatgcccggagtgtggctctgacgcgatccgcgaggagggc
gatgcggtgcgtcggtgttccggcgggttgatctgcccggcgcaggccgtggagaagctg
aagcatttcgtcggccggtcggcctttgacatcgagggactgggcgccaagcaggtcgaa
cagttctacgccgacgggtggatcaaggaaccggcagacatcttcaccctgcgtgaacgc
tacggttcgggcatccagcagttgaagaaccgtgagggctggggcgagaaatccgcgctc
aacctgttcagcgccatcgacgagcggcggcgcatcccccttgggcggctgatctttggc
ctgggcatccggcacgtgggcgaaagcgcgtcgaaccttttggcacggcattacggaacg
tgggcaaccttcgaggccgcgatgaaggacgccgccccgatggagggcgaggcctgggat
gacctcctgtcgatcgacggggtgggcacggttctggcgcaatcgctggtctccgccatg
aaccaggaggcggagcgcgcgtcgatggaccggcttgtcgcgcatctggaggtcgaggaa
gcggcgcggcccgataccgaaggttcacccgtcgcgggcaagaccgtggtgttcaccggc
acgctggaacgcatgacccgggcggaggcgaaggcgcgggcggaggcgatgggcgccaag
gtctcgggcagcgtctccaagaagaccgacatcgtggtggtcgggcccggcgcaggctcc
aaggaaaagaaggcgcgcgagctgggtctgacggtgctggacgaagacgcatggctggag
ctgatcggcggatga
DBGET
integrated database retrieval system