KEGG   Sagittula sp. P11: CDO87_19680
Entry
CDO87_19680       CDS       T05219                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sagu  Sagittula sp. P11
Pathway
sagu03030  DNA replication
sagu03410  Base excision repair
sagu03420  Nucleotide excision repair
sagu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sagu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CDO87_19680
   03410 Base excision repair
    CDO87_19680
   03420 Nucleotide excision repair
    CDO87_19680
   03430 Mismatch repair
    CDO87_19680
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sagu03032]
    CDO87_19680
   03400 DNA repair and recombination proteins [BR:sagu03400]
    CDO87_19680
Enzymes [BR:sagu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CDO87_19680
DNA replication proteins [BR:sagu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CDO87_19680
DNA repair and recombination proteins [BR:sagu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CDO87_19680
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CDO87_19680
   MMR (mismatch excision repair)
    DNA ligase
     CDO87_19680
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CDO87_19680
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT HHH_5
Other DBs
NCBI-ProteinID: AUC55246
LinkDB
Position
4086022..4088136
AA seq 704 aa
MSDTEVGQLTEDQAREELRALADILGQANRAYHAEDAPELSDAEYDRLKRRNAEIEARFP
ELKLADSPSEQVGAAPADGFSKVRHEVRMLSLANAFDDEDIRDFDDSIRRYLGLGADTSL
AFTAEPKIDGLSLALRYEKGKLVRAATRGDGSEGENVTANARTIDDIPTDLTGAPEVLEV
RGEVYMSHADFEALNERQAARGGKTFANPRNAAAGSLRQLDAKITAERPLKFFAYAWGVL
SDPLADTQKGAIDRLKALGFQTNPLTALCDGPEEMLDHYRKVEAQRATLGYDIDGVVYKV
NDLALQERLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGV
VVSNATLHNEDYIAGRDSSGNEIRGGKDIRIGDWVQVYRAGDVIPKVADVDLSQRPDDAQ
PYVFPTECPECGSDAIREEGDAVRRCSGGLICPAQAVEKLKHFVGRSAFDIEGLGAKQVE
QFYADGWIKEPADIFTLRERYGSGIQQLKNREGWGEKSALNLFSAIDERRRIPLGRLIFG
LGIRHVGESASNLLARHYGTWATFEAAMKDAAPMEGEAWDDLLSIDGVGTVLAQSLVSAM
NQEAERASMDRLVAHLEVEEAARPDTEGSPVAGKTVVFTGTLERMTRAEAKARAEAMGAK
VSGSVSKKTDIVVVGPGAGSKEKKARELGLTVLDEDAWLELIGG
NT seq 2115 nt   +upstreamnt  +downstreamnt
atgagcgatacagaggtcggtcagttgaccgaagatcaggcgcgcgaagagcttcgcgcg
cttgccgacattctgggacaggcgaaccgcgcgtatcatgccgaggatgcgcctgaactg
tcggacgccgaatacgaccgcctgaaacgtcgcaacgcggagatcgaggcgcgctttcca
gaactcaagctggccgacagcccgtcggagcaggtgggcgcggctccggcggacgggttt
tccaaggtccgtcacgaggtcaggatgctgtcgctggccaacgccttcgacgacgaggat
atccgcgacttcgacgacagcatccggcgctaccttggattgggcgcggacacgtcgctg
gccttcaccgcggaaccgaagatcgacgggctgtcgctggccttgcgctacgagaagggc
aagctggtgcgcgcggcgacccggggcgatggctccgaaggggagaacgtcaccgccaac
gcccggaccatcgacgacatccccaccgacctgaccggcgcgccggaggtgctggaggtc
cgcggcgaagtctacatgagccacgcggatttcgaggcgctgaacgaacggcaggccgcg
cgcgggggcaagacatttgccaacccgcgcaacgccgctgcggggtctttgcgccagctt
gatgcgaagatcaccgccgaacggcccctgaagttctttgcctatgcttggggcgtcctg
tccgatccgctggcggacactcagaagggcgccatcgatcggctcaaggccctgggtttc
cagaccaatccgctgacagcgctctgcgacgggccggaggagatgctggaccactaccgc
aaggtcgaggcgcagcgcgcaacgcttggctatgacatcgacggcgtggtctacaaggtg
aacgatctggccctgcaggaacggttgggcttccggtccaccacaccccgttgggccatc
gcccacaagttcccggcggaactggcatggacgcggctcgaagccatagacatccaggtc
gggcgcaccggcgcgctgtcgcccgtcgcccgcctgacgcccgtcacggtgggcggtgtg
gtggtgtcgaacgcgacgctgcacaacgaggattacatcgccggacgcgacagttcaggc
aacgagattcgcggcggcaaggacatccgcatcggcgactgggtccaggtctaccgcgca
ggcgatgtcatcccgaaggtggccgacgtcgacctgtcgcagcggccagacgatgcgcaa
ccctatgttttccctacggaatgcccggagtgtggctctgacgcgatccgcgaggagggc
gatgcggtgcgtcggtgttccggcgggttgatctgcccggcgcaggccgtggagaagctg
aagcatttcgtcggccggtcggcctttgacatcgagggactgggcgccaagcaggtcgaa
cagttctacgccgacgggtggatcaaggaaccggcagacatcttcaccctgcgtgaacgc
tacggttcgggcatccagcagttgaagaaccgtgagggctggggcgagaaatccgcgctc
aacctgttcagcgccatcgacgagcggcggcgcatcccccttgggcggctgatctttggc
ctgggcatccggcacgtgggcgaaagcgcgtcgaaccttttggcacggcattacggaacg
tgggcaaccttcgaggccgcgatgaaggacgccgccccgatggagggcgaggcctgggat
gacctcctgtcgatcgacggggtgggcacggttctggcgcaatcgctggtctccgccatg
aaccaggaggcggagcgcgcgtcgatggaccggcttgtcgcgcatctggaggtcgaggaa
gcggcgcggcccgataccgaaggttcacccgtcgcgggcaagaccgtggtgttcaccggc
acgctggaacgcatgacccgggcggaggcgaaggcgcgggcggaggcgatgggcgccaag
gtctcgggcagcgtctccaagaagaccgacatcgtggtggtcgggcccggcgcaggctcc
aaggaaaagaaggcgcgcgagctgggtctgacggtgctggacgaagacgcatggctggag
ctgatcggcggatga

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