Sphingopyxis alaskensis: Sala_1947
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Entry
Sala_1947 CDS
T00361
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
sal
Sphingopyxis alaskensis
Pathway
sal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sala_1947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sal03019
]
Sala_1947
Messenger RNA biogenesis [BR:
sal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sala_1947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
CMS1
MerR-DNA-bind
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABF53659
UniProt:
Q1GRR3
LinkDB
All DBs
Position
complement(2052468..2053847)
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AA seq
459 aa
AA seq
DB search
MTSFNDFGLHADINRALAAKDYTQPTPIQTQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS
IHHLLTYPHRPTPRGCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVSTVFGGVPINKQIR
DLSQGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPSR
RQNLFFSATMPKEIAGLADQFLNDPVTVSVAPQATTAEKVRQFATFVEQKEKQALLHHVI
KTSDIDRALIFTRTKHGADRVVRHLKGAGIEAFAIHGNKSQAQRTAALQAFRSGQVRLLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFIAPDERPYIRDI
ERVTRTRAEPMPLPEGFNELVRNLPKPVQPPRDTGSRGRDPNRQRQDARRQPSGGQPRGD
RGPRRDAPAGEGAEGQRKRRFRPRNKSVGAHKGAVKRVG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttttaacgactttggcttgcacgccgacatcaatcgagcgcttgccgccaag
gattatacccagccgaccccgatccagacacaggcgatcccgccgctgatgaagggccgc
gacctgtgcggcatcgcgcagaccgggaccggcaagaccgccggcttctcgctcccctcg
atccatcaccttttgacctatccgcaccgcccgaccccgcgcggctgccggatgctcgtc
ctcgcgccgacgcgcgagcttgccgcgcagatcgcgcagagctgccgcgattacggccgc
tttaccaagctcagcgtctcgaccgtcttcggcggcgtgccgatcaacaagcagatccgc
gacctttcgcagggcgtcgatatcctcgtcgcgacgccgggccgcctgctcgacctgatc
gaccagcgcgcgctgcgtctcgacgatgttgaaatcttcgtgctcgacgaagccgatcag
atgatggacatgggtttcatccattcgctgcgccgcgttgcaaagctgttgccctcgcgg
cgccagaacctgttcttctcggcgaccatgccgaaggagattgcgggccttgccgaccag
ttcctcaacgatccggttaccgtgtcggtcgcgccgcaggcgacgaccgccgaaaaggtc
cgccagttcgccactttcgtcgaacagaaggaaaagcaggcgctgctccatcacgtcatc
aagacgtcggacatcgatcgcgcgctgatcttcacgcgcaccaaacatggcgccgaccgc
gtcgtgcgtcacctgaagggtgcgggcatcgaggcgttcgccatccacggcaacaagagc
caggcgcagcgcaccgccgcgctgcaggcctttcgttcgggccaggtgcgcctgcttgtc
gcaaccgacatcgccgcgcgcggcatcgacgtgtcgggggtcagccatgtcatcaatttc
gagatcccgaacgtccccgaacaatatgttcaccgcatcggtcgcacggcgcgcgccggg
gcagagggcatcgcgatcagcttcatcgcccccgacgagcggccgtacatacgcgacatc
gagcgcgtgacgcggaccagggccgagccgatgccgcttcccgaaggcttcaacgaactg
gtgcgcaaccttcccaagccggtgcagccgccgcgcgataccggcagcaggggccgcgat
ccgaaccgccagcgtcaggatgcgcgtcgccagccgagcggcggccaacctcgcggtgat
cgcggtccgcgccgcgatgctccggccggcgaaggcgccgaaggccagcgcaagcgccgc
ttccgcccgcgcaacaaaagcgtcggcgcgcacaaaggcgcggtgaagcgcgtcggttga
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