Salinibacterium hongtaonis: C2138_07830
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Entry
C2138_07830 CDS
T05414
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
salc
Salinibacterium hongtaonis
Pathway
salc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2138_07830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salc03019
]
C2138_07830
03009 Ribosome biogenesis [BR:
salc03009
]
C2138_07830
Enzymes [BR:
salc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C2138_07830
Messenger RNA biogenesis [BR:
salc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C2138_07830
Ribosome biogenesis [BR:
salc03009
]
Prokaryotic type
rRNA processing factors
C2138_07830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AWB89460
LinkDB
All DBs
Position
complement(1628361..1630997)
Genome browser
AA seq
878 aa
AA seq
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MVDTNENNDGTQKDGVRKRVRLFGSRRKAAEKTVTAPSTTPAIVEEAIVAEPIQQPTNET
APAVEAPVVEKAAEVDSSSPEPVQAKTTRARAPRKAKSSEVSPDASADDAAAPTEATAPL
VARSTTSLFFKAPDLPTMVPPSDSPARSNHDDEDEEPSSSARRRTRRRSSEDDAPESERS
ATVTRTRAPRVQPEPSNEPQKVRGSTRLEAKKQRRRDGRDAGRRRPVVTEAEFLARRESV
DRTMVVRQKNNRIQIGVLEDGVLVEHYVAQSAEASLIGNVYLGRVQNVLPSMEAAFVDIG
RGRNAVLYSGEVDWDAAAENSAEGKNQARRIELALKPGDKVLVQVTKDPVGHKGARLTSQ
VSLPGRYLVYVPNGSMNGISRKLPDTERARLKKILKEVLPDNTGVIVRTAAEGATEEQLT
LDVNRLTSQWASISAALETVSAPALLHSEPDLLVKIVRDVFNEDFHKLVIDGEEARATIT
NYLSAVAPDLVDRIEKYEGDRDSFDQYRISEQIEKALDRKVWLPSGGSLVIDRTEAMTVV
DVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLR
RLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLIESFSEACEACAGRGIIIHHDPVVK
HRQSPQPETRRSRGGKGNNGGGNNNGGNGGNSSGPQGGGAAAAAAPKTSPTHVITEDVKN
ALAQIAASTIAGTIEAGTAHDGASAEQNAGETPEQAPAKSGRSRRSRSKASTPAASESPA
ESAEAPAMKQDADATQSASHRESVESVEVVEILDIPVVKSTSTAKRVSTRDAEEILGSLL
DALPEPKQPGQGRSRGSRRASSAGVVQAGTAQTVTAED
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggtggatacaaacgaaaacaatgacggcacacagaaggatggggttcgcaagcgagtt
cgactgttcggttcgcgccgaaaggctgccgagaagacagtgaccgccccgagcacgact
cctgcgatcgttgaggaggccatcgtggccgagcccattcagcagcccaccaacgagacc
gcaccggcagtcgaggctccggtagtcgagaaggccgcggaagttgattcctcttcgcct
gagcctgttcaggcgaagactacgcgtgcccgcgccccgcgcaaggcgaaatcaagcgaa
gtgagccctgacgcttcggcagatgacgcagctgcgcccacggaagcgacggccccgctc
gttgcccgctccacgacctcgctgttctttaaagcgccagatctgccgacgatggttcct
ccgtcggattcccctgcgcgcagcaaccacgatgatgaggacgaggagccatcgtcgtcg
gctcgtcggcgtactcggcgccgttccagcgaggacgacgcacctgagtcggagcgctcc
gcgaccgtaactcgcacccgcgcgccacgggtgcagccggagccttcgaacgaaccgcag
aaggtgcgcggctcgacccgccttgaggccaagaagcagcgtcgccgtgatggccgtgat
gcgggtcgccgccgtccggttgtcaccgaggccgagttccttgctcgccgcgaaagcgtc
gaccgcacgatggtcgttcgtcaaaagaacaaccgcatccagatcggtgttctcgaggac
ggcgtgctcgttgagcactatgttgcacagtcggccgaggcatcgctcatcggcaatgtg
tacctcggtcgcgtgcagaacgttctgccgagcatggaggctgcgttcgtcgatatcggg
cgcgggcgcaatgccgtgctctactccggtgaggtcgactgggatgctgctgcggagaat
tccgccgagggcaagaaccaggcgcgccgcattgaactcgccctcaagccgggcgacaag
gtgctcgtgcaggtcacaaaggatcccgtcggtcacaagggtgcccgtctcacgagccag
gtctcgctgcccggccgttacctcgtctacgtgccgaacggctcgatgaatgggatcagc
cgcaagctgcccgacaccgagcgtgcgcgcctcaagaagattctcaaggaggttctcccc
gacaacacgggcgttatcgtgcgcaccgccgccgagggagccaccgaagagcaactgacg
ctcgatgtcaatcgcctcacgtcgcagtgggcctcgattagcgctgccctcgaaaccgtc
tcggcaccggcgctccttcacagcgagcccgacctgttggtcaagatcgtccgtgatgtc
ttcaacgaggacttccacaagctggtcatcgatggcgaagaagctcgcgccacgatcacc
aactacctgagtgccgtagcgcccgacctcgtcgaccgcatcgaaaagtacgagggtgac
cgcgactcgttcgaccagtaccgcatcagcgagcagatcgagaaggcgctcgaccgcaag
gtctggctgccctcaggaggctcgctcgtcatcgaccgcaccgaggcgatgaccgttgtg
gacgtcaacacgggcaagttcgtcggatcgggtggaaacctcgaagagaccgtcaccaag
aacaacctcgaagccgcagaagagatcgttcgccagctccgcctgcgcgacatcggcggc
atcatcgtcgtggacttcatcgacatggtgctcgaatccaaccgagacctcgttcttcgc
cgcctcgtcgagtgcctgagtcgtgaccgcacgaagcaccaggttgcggaggtcacgagc
ctcgggctcgtgcagatgacccgcaagaagctgggtctcggtctcatcgagtcgttcagc
gaggcctgtgaggcctgcgctggccgcggcatcatcattcaccacgaccccgtcgtcaag
caccgccagtcgccccagcccgaaacgcgtcgcagccgcggcggcaagggcaacaacggc
ggcggcaataacaacggtggcaacggtggcaactccagcggcccgcaagggggaggcgcc
gcggcagctgctgccccgaagaccagcccgacccacgtgatcacggaggacgtcaagaac
gctctcgcccagatcgccgcgagcaccattgctggcacgatcgaagcggggaccgctcac
gatggcgcctctgctgagcagaacgctggcgaaacaccggagcaggccccggctaagtcc
ggtcgatcccgccgatcacgctcgaaggcgtcgactccagcagcgagcgagtcgccggcc
gagtcggcagaagctccggccatgaagcaggatgcagatgccacacagagcgcttcccac
cgcgaaagcgtcgaaagcgtcgaggtcgtcgagatcttggacatccccgtggtcaagtcc
acgagcacggccaagcgcgtcagtacccgtgatgccgaggagattctcggaagcctgctt
gacgctcttcctgagcccaagcagccaggccagggccgctcgcgcggttctcgcagggct
tcgagtgccggtgtcgttcaggctgggacagctcagaccgttaccgcagaggactag
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