Salinisphaera sp. LB1: SALB1_3395
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Entry
SALB1_3395 CDS
T05476
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
saln
Salinisphaera sp. LB1
Pathway
saln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALB1_3395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saln03019
]
SALB1_3395
03016 Transfer RNA biogenesis [BR:
saln03016
]
SALB1_3395
Enzymes [BR:
saln01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SALB1_3395
Messenger RNA biogenesis [BR:
saln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SALB1_3395
Transfer RNA biogenesis [BR:
saln03016
]
Prokaryotic type
tRNA degradation factors
SALB1_3395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_2
SLS1_KH2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
AWN17589
UniProt:
A0A2Z3JDF8
LinkDB
All DBs
Position
complement(3732069..3734192)
Genome browser
AA seq
707 aa
AA seq
DB search
MSKVEVTSRQTFQYGEHDVTLETGEIARQADGAVKVSMGDTVVLVTAVGKKEAKPDANFF
PLTVNYQERTYAGGKIPGGFFKREGRPGEKETLTCRLIDRPIRPLFPKDFHNEVQIIATV
MSVDPEIDPDIPAMIGASAALALSGMPFDGPIGGARVGYANGEYVLNPSATQIKESDLNL
VVAGTSDAVLMVESEAKQLSEQIMLGAVLFGHEQLQAAIQAISALAAEAAKPAWNWQAAE
KDQSLAEAVARIAGEDVTAAYQIADKQERQTRLGEIKDKVVEELVATEDETGYSREDVKA
ALGDLEKKTVRSRILEGEPRIDGRDTRTVRDLTIRTGVLPRTHGSALFTRGETQALAVAT
LGTGRDAQLIDAVEGKYEDPFMLHYNFPPYCVGETGFMGSPKRREIGHGKLAKRGIMGVL
PDLENEFPYVMRVVSEVTESNGSSSMASVCGTSLALMDAGVPIKAPVAGVAMGLIKEGDK
FAVLTDILGDEDHLGDMDFKVAGSKNGITALQMDIKIGGITREIMEVALDQAREGRLHIL
DVMSEAIDAPRKEVSEWAPRIFTIKIDSEKIRDVIGKGGATIRSITEETGASIDIEDDGT
IHVAAVDKSAADLAIQRIEEITKDIEAGQIYEGKVVRIVDFGAFVNLAPGRDGLVHISQI
APHRVENVTDELSEGQMVKVKVLEVDRQGRVRLSMKELAEPEESTEG
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaagtagaagtcaccagccggcaaacgttccagtacggcgagcacgacgtcacg
ctggaaaccggtgaaatcgcgcgccaggcggatggcgcggtcaaggtcagcatgggcgac
accgtggtgctcgtcaccgcggtcgggaaaaaggaagccaagcccgatgcgaatttcttt
ccgctgaccgtcaattaccaggagcgcacctatgccggcggcaagatccccggcgggttc
ttcaagcgcgaaggccgcccgggcgagaaggaaacgctgacctgccgtctgatcgatcgt
ccgatccggccgctgtttcccaaggatttccataacgaagtccagatcattgccacggtg
atgtcggtcgatcccgagatcgatcccgacattcccgcgatgatcggcgcctcggccgcg
ctggcgctgtcgggcatgccgttcgacggccccatcggcggggcacgcgtgggttatgcc
aatggcgagtacgtactcaatccgagcgcgacccagatcaaggaaagcgacctcaacctc
gtcgtcgccggtacgtccgacgctgtgctgatggtggaatccgaagccaagcagctgtcg
gaacagatcatgctgggggcggtgctgttcggccacgaacagttgcaggccgcgatccag
gcgatcagtgcgctggcagcggaagccgccaagccggcctggaactggcaggcggccgag
aaggaccagtcgctggccgaggcggtcgcgcgcattgccggcgaggacgtcaccgccgcc
taccagatcgccgacaagcaggagcgccagacacggctgggcgagatcaaggacaaggtc
gtcgaggaactggtggcgaccgaagacgagacaggctactcgcgtgaagacgtgaaggct
gcactcggcgatctcgagaagaagaccgtgcgctcgcggatcctcgaaggcgagccgcgt
atcgacgggcgcgacacgcgcaccgtgcgcgacctgaccattcgtaccggcgtgctgcca
cggacccatggctcggcgttgttcacccgcggcgagacccaggccctggcggtcgccacg
ctcggcacgggtcgcgatgcccagctcatcgatgcagtcgaaggcaagtatgaagacccg
ttcatgctgcactacaactttcccccgtactgcgtgggtgagaccggcttcatgggcagt
ccgaagcggcgcgagattggccacggcaagctggccaagcgcggtatcatgggcgtgttg
ccggatctcgagaacgagttcccctacgtcatgcgcgtggtctcggaagtcaccgaatcc
aatggctcgtcctccatggcctcggtctgcggcacgagcctggcgttgatggacgcgggc
gtgccgatcaaggcgccggtcgccggtgtggccatgggcctgatcaaggaaggcgacaag
ttcgctgtgctcacggatatcctgggcgacgaggatcacctcggcgacatggacttcaag
gtggccgggtccaagaacggcatcaccgcgctgcagatggatatcaagatcggcggcatt
acgcgcgagatcatggaagtcgcgctggaccaggccagggaaggccgtctgcacatcctg
gacgtcatgtccgaggcgatcgacgcaccgcgcaaggaagtctccgagtgggcgccgcgc
atcttcacgatcaagatcgattcggagaagatccgcgacgtgatcggcaagggcggcgcg
acgatccgctccatcaccgaggaaaccggcgcgtcgatcgatatcgaggacgacggcacg
atccatgtggccgcggtcgacaagtcggcggcggatctcgcgatccagcgtatcgaggag
atcaccaaggacatcgaggccggccagatctacgaaggcaaggtcgttcgcattgtcgac
ttcggcgccttcgtcaacctggcgccgggccgcgacggtctggtgcatatttcccagatc
gcgccgcatcgtgtggagaacgtcacggacgagctctccgaaggtcagatggtcaaggtc
aaggtgctggaagtcgatcgtcagggccgtgtccggctttcgatgaaggaactggctgag
cccgaggaaagcaccgagggctga
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