Silicimonas algicola: EF888_00650
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Entry
EF888_00650 CDS
T05779
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
salo
Silicimonas algicola
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salo03032
]
EF888_00650
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_00650
Enzymes [BR:
salo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EF888_00650
DNA replication proteins [BR:
salo03032
]
Prokaryotic type
DNA Topoisomerases
EF888_00650
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EF888_00650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Top1B_N_bact
Topoisom_I
Motif
Other DBs
NCBI-ProteinID:
AZQ69527
UniProt:
A0A316G4L0
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All DBs
Position
complement(119148..120131)
Genome browser
AA seq
327 aa
AA seq
DB search
MNAAPASLTYYPDNRPGIRRERKGRGFSYIAPDGTRISRGAERQRIESLAVPPAYENVWI
CPKPNGHLQATGYDVRERKQYRYHPDWTTFRSERKFERLADFGRCLPGIRRRVSKHLNLD
AGEQGFAIAAVVAMMDCLSLRVGNPEYADENGTYGATTLKSKHLRLQDHALHLNYVAKGN
KKVMRQVGNRKLMETLQKLHDLPGAELVTWIDEDGDARAVSSDQVNAWIQEATGQPDLTA
KTFRTWAGSVAALEAAAKADRVTIKGMSEAAAERLANTPTIARTSYIHPAVIALAETPEA
LQVEAEDLRGLRASERKLLGLLDYWKG
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgcacccgccagcctcacctactatcccgacaaccgacccggcatccggcgc
gagcggaaggggcggggattttcctacatcgctcccgacggcacacgcatttcgcgcggc
gcggaacgccagcggatcgagtccctcgcggtcccgcctgcctacgagaacgtctggatc
tgtcccaagccgaacggccatcttcaggccaccggctatgacgtgcgcgagcggaagcag
tatcgctatcaccccgactggaccacgttcaggtccgagcggaaattcgagcgtctcgcc
gacttcggccgctgccttcccggcatccgccggcgcgtgtccaagcacctgaacctcgac
gcgggagagcagggcttcgccatagccgccgtcgtcgccatgatggactgcctgtcgctc
cgcgtcggcaatcccgaatacgccgacgagaacggcacctacggcgcgacgacgctgaag
tcgaagcacctgcgccttcaggatcacgccctccacctcaactatgtcgcaaagggcaac
aagaaggtcatgcgacaggtcggcaatcgcaagctgatggagacgctgcagaagctgcac
gaccttccgggggcggaactggtcacctggatcgacgaggatggagacgcgcgcgccgtc
agctcggatcaggtcaatgcctggattcaagaggcgaccggccagcccgacctgaccgcc
aagacgttcagaacctgggcagggtcggttgccgcgctcgaagcggccgcgaaggccgat
agggtgaccatcaagggcatgtccgaggccgcggccgaacggcttgccaacacgcccacc
atcgcgcgcacctcctacatccatcccgccgtcatcgcgttggccgagacgcccgaggcg
ctgcaggtcgaagcggaggatctcaggggtcttcgagcgtccgaacgcaaacttctgggt
cttctcgactactggaagggttga
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