Silicimonas algicola: EF888_12000
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Entry
EF888_12000 CDS
T05779
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
salo
Silicimonas algicola
Pathway
salo03030
DNA replication
salo03430
Mismatch repair
salo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EF888_12000
03430 Mismatch repair
EF888_12000
03440 Homologous recombination
EF888_12000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salo03032
]
EF888_12000
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_12000
Enzymes [BR:
salo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EF888_12000
DNA replication proteins [BR:
salo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EF888_12000
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EF888_12000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
Motif
Other DBs
NCBI-ProteinID:
AZQ67793
UniProt:
A0A316GA01
LinkDB
All DBs
Position
complement(2416614..2420132)
Genome browser
AA seq
1172 aa
AA seq
DB search
MTNAPRFIHLRVHTEYSLLEGAVRLKKLPGLCQKAGMPAVAVTDTNNMFAALEFSVSAMG
QGIQPIVGCQISVAYERPAPGDKPVPPAPMVLLAQNKAGYQSLMTLNSCLYLRDADAPHV
TLEDLAANAEGLICLSGGADGPVGRLLQAGHAARAEALARRLSEIYPTRFYIELQRHPGE
GGQLPEAERLTERPAIEMAYAMELPLVATNDVFFPDAKMYEAHDALICIAEGAYVDQQAP
RRRLTQQHYFKSAHEMAALFADLPEALENTVEIARRCAFAVETHEPILPRFADDEVEELR
RQAKQGLEARLAVIEPAAPRADYDARLEFELGIIEGMGFPGYFLIVADFIKWAKDHSIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIRYV
QGKYGADRVGQIITFGALLSKAAVRDIGRVLQMPYGQVDRLSKLIPVEGVKPMSIERALA
EEPRLREEARSEEVVDRLLTYGQQVEGLLRNASTHAAGVVIGDRPLDQLVPLYRDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIELILASGRRLHEAADGTRLYEPEAGTE
NDIGLIPLEDEKTYELYAKARTVAVFQVESSGMMDALRRMKPTCIEDIVALVALYRPGPM
ENIPQYCDVKNGRAERERLHPSIDHILDETQGIIVYQEQVMQIAQEMAGYSLGGADLLRR
AMGKKLQSEMDKERPKFIAGAKTHGVDDRKALEVWNLLDKFANYGFNKSHAAAYAVVSYQ
TAWLKANHPVEFMAGVMNCDLHQTEKLSVYAEEVRRGLDIAIVPPCVNRSEASFSVRDGK
LVYALGALKNVGLDAMRLIVEGRGGRPFSTLYDLARRVDLKRIGKRPLEMLARAGAFDEL
DPNRRRIFSSLDALTAYSAAIHEQKGSAQVSLFGEAGDDLPEPRLSPIDDWLPNERLAQE
QAAIGFYLSGHPLDDYAVALKRKGMLTLAELQAKAERDGAAVARVGVIVSGLQERKSGRG
TRFFRMNISDPTGQVSGMALFPDDFDTIRRVFEQTHQVVMTLEARFNEGQFDPIARGVTP
IEGLVADGMAAGLNVMIDTPDAAVLIQSVLGRFREDGSIRARGPVRITALAVPLGGAPQD
VPVDIGDGWPVSPQIKGALKSLPGVVAVEELA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgccccccgattcattcacctgcgcgtccacaccgagtattctctgctggaa
ggggccgtgcggctgaagaagctgccgggtctctgccagaaggccgggatgcccgccgtc
gcggtcacggacacgaacaacatgttcgcggcgctcgagttttccgtctcggcgatgggg
cagggcatccagccgatcgtgggctgccagatctcggtcgcctacgagcggcctgcgccg
ggcgacaagccggtgccgcccgcgccgatggtcctgctggcgcagaacaaggcgggctac
cagagcctgatgacgctgaattcctgcctctatctgcgcgatgccgacgcaccgcatgtc
accctcgaggacctcgccgcgaatgccgaggggctcatctgcctgtcgggcggtgcggac
gggccggtcggacggcttctgcaggcgggacacgcggcccgtgccgaggcattggcgcgg
cgcctgtcggaaatctacccgacgcggttctatatcgagctgcagcgccaccccggcgaa
ggcgggcagttgcccgaggccgagcgcctgacggaacgccctgccatcgagatggcatac
gcgatggagctgccgctcgtcgccacgaacgacgtctttttccccgatgcgaagatgtac
gaggcgcatgacgcgttgatctgcatcgccgaaggcgcctacgtcgatcagcaggcgcca
cgccgcaggctgacccagcagcactacttcaagtccgcgcacgagatggcggccctcttc
gccgacctgcccgaggcgctggagaataccgtcgagatcgcgcgccgctgcgccttcgcc
gtcgagacccacgagccgatcctgccgcgcttcgccgacgacgaggtcgaggagttgcgg
cgtcaggcgaagcaggggctcgaggcgcgtcttgcggtgatcgagcccgccgccccgcgc
gcggactacgacgcgcggctcgagttcgagctgggcatcatcgagggcatggggttcccc
ggttacttcctgatcgtggcggacttcatcaagtgggcgaaggatcactcgatccccgtc
gggccgggccgcggctcgggcgcgggctcgctggtggcctatgcactgaccatcaccgac
ctcgatcccctgcgctattcgcttcttttcgagcggttcctgaaccccgagcgcgtgtcg
atgccggacttcgacatcgacttctgcatggaccggcgcgaggaggtgatccgctacgtc
cagggcaagtacggcgccgaccgggtcggccagatcatcaccttcggagcacttctgtcg
aaggcggcggtgcgggacatcgggcgcgtgctccagatgccctacggccaggtcgaccgg
ctgtccaagctgatcccggtcgagggcgtgaagcccatgtcgatcgagcgcgctctggcc
gaggagccgcgcctgcgtgaagaggcgcggtcggaagaggtcgtcgaccggcttctcacc
tacggccagcaggtcgagggtctgttgcggaacgcttcgacccacgccgccggtgtggtg
atcggcgaccggccgctggaccaactcgtgccgctttaccgcgatccgcggtccgatatg
ccggccacgcagttcaacatgaagtgggtcgaacaggcgggactggtgaagttcgacttc
ctcggcctcaagaccctgaccgtgatccagaacgccatcgagctgatccttgcctcgggg
cgcaggctgcacgaggcggcggacggcacccggctttacgagccggaggcgggcaccgag
aacgacatcgggcttatccctctcgaggacgagaagacctacgagctttacgccaaggcc
cgcacggtcgcggtgttccaggtcgaaagctcgggcatgatggatgcgctccggcgcatg
aagcccacctgcatcgaggacatcgtggcgcttgtggcgctctaccggcccggtccgatg
gagaacatcccgcaatactgcgacgtgaagaacggccgcgccgagcgcgagcgtctgcac
ccctccatcgaccatatcctggacgagacgcagggcatcatcgtctatcaggaacaggtg
atgcagatcgcgcaggagatggcgggttattcgctcggcggcgccgaccttctgcgccgc
gccatgggcaagaagcttcagtccgagatggacaaggagcggccgaagttcatcgcgggc
gccaagacccacggggtcgacgaccgcaaggcgctggaggtctggaaccttctcgacaag
ttcgccaactacggcttcaacaagtcgcacgccgccgcctatgccgtcgtcagctaccag
acggcctggctgaaggcgaaccacccggtcgagttcatggcaggcgtgatgaactgcgat
ctccaccagaccgaaaaactgtccgtctatgccgaggaggttcgccggggcctcgacatc
gccatcgtgcccccttgcgtgaaccggtcggaagcctccttctcggtccgcgacggcaag
ctggtctatgcccttggcgcgctgaagaacgtggggctcgacgcgatgcggctgatcgtc
gaggggcggggcgggcgacccttctcgacgctttatgaccttgcccgacgcgtcgacctg
aagcgaatcggcaagcggccgctcgaaatgctggcccgcgctggggccttcgacgagctc
gatccgaaccggcggcgcatcttctcgtcgctcgacgcgctgaccgcctattcagcggcg
atccacgaacagaagggcagcgcgcaggtctcgcttttcggcgaggcgggcgacgacctg
cccgagccgcgtctgtcgcccatagacgactggctgccgaacgagaggctggcgcaggaa
caggcggcgatcggcttctacctgtccggccaccccctcgacgactatgcggtcgcgctg
aagcggaaggggatgttgacgctggccgagcttcaggcgaaggccgagcgcgacggcgcg
gcggtcgcccgcgtgggtgtcatcgtctcggggcttcaggagcggaaatcggggcgcggc
acgcgcttcttccgcatgaacatctcggaccccactgggcaggtgtccggcatggcgctt
ttcccggacgacttcgacaccatccgccgcgtgttcgagcagacccaccaggtcgtgatg
acgcttgaggcccgcttcaacgaaggtcagttcgaccccattgcgcgtggcgtgaccccg
atcgagggactggtcgccgatggcatggccgcgggactcaacgtgatgatcgacacgcct
gacgccgccgtgctgatccagtcggtcctcgggcgcttccgcgaggatggctcgatccgg
gcgcgggggccggtgcggatcacggcgcttgcggttccgcttggcggggcgccgcaggac
gtgccggtggacatcggcgacggctggcccgtgtcgcctcagatcaagggggcgctgaaa
tccctgccgggcgtcgtggcggtcgaggaactggcctga
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