Salvelinus sp. IW2-2015 (Arctic char): 111949639
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Entry
111949639 CDS
T05762
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111949639
09124 Replication and repair
03420 Nucleotide excision repair
111949639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111949639
03400 DNA repair and recombination proteins [BR:
salp03400
]
111949639
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111949639
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111949639
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111949639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
ResIII
DEAD
SesA
Motif
Other DBs
NCBI-GeneID:
111949639
NCBI-ProteinID:
XP_023822746
LinkDB
All DBs
Position
LG22:13991136..14002569
Genome browser
AA seq
769 aa
AA seq
DB search
MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
REYPLEVTKLIYCSRTVPEIEKVVEELRKLTEFYSKETGEKNNFLALALSSRKNLCVHPE
VSSLRFGKEVDGKCHSLTASYIRAQRHSNPSLPSCRFYEEFDAMGKQVPLPAGVYNLDDM
KDFGRRKGWCPYYLARYSIXHANIIVYSYHYLLDPKIADLVSKELSKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRSQANVETLQNTILKIKETDAAKLKEEYRRLVEGLKEANVARE
TDIYMSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKSRLRIHHVMQESAPQFLKD
IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSAITLILQKTFDLSTLVSTYSKGIHI
IIEPFEDRTPTIANPFCTSGAVHIFCMDPSIAIKPVFERFQSVIITSGTLSPLDIYPRIL
DFRPVTTASFTMTLARTCLCPLVVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIV
PDGIVAFFTSYTYMENIVASWYEQGILENVQRNKLIFIETPDAAETSMALEKYQEACENG
RGAILLSVARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDF
LTFDAMRHAAQCVGRVIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTID
ETVQLSKHFLRQMAQPFRQEDQLGLSLLTLEQLQSEDMLQKIAQIAHQA
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcaacatcgaagggttgttagtctattttccttatgactacatttacccagag
caatattcctacatgctggaactcaagaggaccctggatgccaagggacatggtgttctg
gagatgccatcgggaactgggaaaaccatctctcttctgtcattgattgttgcatatcag
cgggagtatccccttgaagtcacaaagctgatctactgttcccgaactgttcctgagata
gagaaggtggtggaggagttgaggaagcttacggagttctattctaaggagacgggagag
aagaacaacttcctggctctggcgctctcctctcgaaaaaacctatgtgttcaccctgag
gtgagctcgttacgctttgggaaggaggtggatgggaaatgtcacagcctgacagcatca
tatatccgcgcccaacggcacagcaacccaagcctgccttcctgccgtttctatgaggag
tttgacgctatgggaaagcaggtgcccctcccagctggagtctacaacctggatgatatg
aaggactttgggcggaggaaaggctggtgcccctactacctagcacgctattcgatcktc
catgccaacatcatagtttacagttaccactacctcctggatccaaagattgcagaccta
gtatcaaaggagctctccaagaaatcggtggttgtttttgatgaagcacataacatcgac
aacgtgtgcatcgactccatgagtgtcaacatcaccaggaggactctggaccgcagtcag
gccaacgtggagaccctacagaacaccattctcaagataaaggagacagacgcagccaaa
ctgaaagaggaatacagacgattggtggagggcctgaaagaggccaacgttgccagggag
accgacatctacatgtccaatcccgtgttgccagatgagatcctccaagaggctgtgcct
ggcagcatccgcacggcagagcactttgtgggcttcatgaagcgtttcctggagtacctg
aagtccaggctgaggattcaccatgtaatgcaggagagcgctccccagttcctcaaagac
atctttgagaaggtctgcattgaccgcaagcccctcagattctgtgccgagaggttgcgt
tcgttgctgaggactttagagatagcggacatcgcagacttctcagccatcaccctcatc
ttacagaaaacgtttgacctctccacactggtcagcacttacagcaaagggattcacatc
atcattgaaccctttgaagaccgaacccccaccattgctaacccgttctgcacttcaggt
gcggttcatattttctgtatggacccttccattgccatcaagcctgtgtttgagcgcttc
cagtctgtcatcattacgtcagggaccctttcaccgttggacatttacccccgaatcctg
gacttccggcctgttaccacggcatccttcaccatgacgctggcacgcacctgcctctgc
cctcttgtggtggggagggggaacgaccaggtggccatgacctccaagtttgagacncgt
gaagattttgctgtcatccgtaactatggcaacctgctgctggagatgtctgcgatcgtg
cccgatggcatcgtggccttctttaccagctacacctacatggagaatattgtggcgtcg
tggtatgagcagggcatcttggagaacgtccagaggaacaagctgatcttcatcgagacc
ccagacgcagcagagaccagcatggctctggagaaataccaggaggcctgtgagaacggc
agaggagccatcctgctgtctgtggccagggggaaggtgtccgagggaatcgactttgtc
caccattttggccgtgcggtgatcatgttcggagtgccttacgtttacacacagagccgg
atcctgaaggctcgtctggagtacctgcgggaccagttccagattagagagaatgacttc
ttgacatttgacgccatgcggcacgcagcgcagtgtgtgggccgcgtcatcaggggcaag
acagactacggcttgatgatcttcgcagacaagcgctatgcccgggctgacaagcgaggg
aagctgccccggtggattcaggagcacctcactgacggtagcctcaacctgaccatcgac
gagacggtacagctgtccaaacacttcctacgccagatggcccagcccttcagacaggag
gaccagttgggcctgtctctgctgacactggagcagctgcagtcagaggacatgctgcaa
aagatcgcccagatcgctcaccaagcctaa
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integrated database retrieval system
