KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111953692
Entry
111953692         CDS       T05762                                 
Name
(RefSeq) DNA ligase 4-like
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    111953692
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:salp03400]
    111953692
Enzymes [BR:salp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111953692
DNA repair and recombination proteins [BR:salp03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     111953692
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV DNA_ligase_A_C BRCT_2 BRCT RNA_ligase
Other DBs
NCBI-GeneID: 111953692
NCBI-ProteinID: XP_023828890
LinkDB
Position
LG27:27388051..27391964
AA seq 914 aa
MEGTSKGEAAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNFTTDLNKVCRQLHDPSVS
LSEVSIGLFFAFKPMLAAMANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTADTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDGPEKKKRKLPAAAKPKKAVGVIDHFKSQDLSGV
TKERNMFEDVEFCVMNGNEAHTKAELEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNL
ISSDQHDVVWAAWLLECLDRKQVVPWQPCHMIHMSPSTKEHFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRADTLTAQCIAKLEERYSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPAT
CLDTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq 2745 nt   +upstreamnt  +downstreamnt
atggagggaacctcaaaaggcgaagctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactctttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtatggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccagaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggagacttcgctcttatgacctactttgtgttgaag
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgccggtaagcagaaggacctggtgaagaagagcctgctgcatctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggggtcagcaaagagaccgtactccaggtgttccacttagatgcggccgagctc
tataacttcaccacagacctaaacaaggtgtgccggcagctccacgacccctctgtgtcc
ctcagcgaagtgtccattggcctgttctttgccttcaaacctatgctggccgccatggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacacctttc
atccacaatgtcttcaagccccacgtagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactgccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactccgagctgcagacgtgcttttgcgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtgaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttcctcgttgcggtggccgaagctccgaagcctgga
gagaaaccctctgtcttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggctgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctccattctgtgtgggacggagagaccggaagtctacattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgacatgtacaaaaccaactgc
acgttacgcttccccaggatcgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacaatgacgggcctgaaaagaagaagcgcaagttgccggcagcggcc
aagcccaagaaagctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcgtc
accaaggagagaaacatgttcgaggacgtggagttctgcgtgatgaatggcaacgaggcg
cacaccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggacacctactgtgtgattgccgctgtggagaacatgcgtgtgaagaacctt
atctcttcagaccagcacgacgtggtgtgggctgcctggctgctggagtgcctagacagg
aagcaggtggtgccatggcaaccatgtcacatgatacacatgtcgccctccaccaaggag
cactttgccaaggaatacgactgctacggagacagctacttcgtggacacggacgagcag
cagctgagggaagtcttcggtcggattggcagagcggacactttgacggcacagtgcatc
gctaagttggaggaacgctacagctgggacgacctccccactagcatgttcagacctttc
agggtctacatggacagatacgcagacataggagaccctaaaagcatcgtaccagcaact
tgtctggacacacgggctctggaattccgcttccacggagggacagtagtgcagaagctc
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagagtct
atcaaagcagggtttttgcggaatgacaatgactacctagtgtga

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