Salvelinus sp. IW2-2015 (Arctic char): 111958253
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Entry
111958253 CDS
T05762
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
111958253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111958253
04121 Ubiquitin system [BR:
salp04121
]
111958253
03036 Chromosome and associated proteins [BR:
salp03036
]
111958253
Enzymes [BR:
salp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
111958253
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
111958253
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
111958253
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
111958253
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
111958253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
Viral_cys_rich
Motif
Other DBs
NCBI-GeneID:
111958253
NCBI-ProteinID:
XP_023835249
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All DBs
Position
LG33:complement(13366745..13388858)
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AA seq
779 aa
AA seq
DB search
MALSLSADEEDYESESEQQHAANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGDCHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDSLEEEEDK
FNIMLMECSICSEIVHPNCLKVKDASGVVNDELPNCWECPKCNSAGKTGKVCKQKRGPGF
KYASNLPGSLLREQKAVKEEGESTSTSTVKRKPERDETPRHRPEEWEPLHRQPPVLSPST
LPRPRPEDKLRKKRKLFDDDYEEDFDVRKKGKSDGHLFINQIKTEEEEEVDEEEKASLYR
RGLERRGRLRDTEEEAEDGDDEDTKTSLPRPPLKTSVLDSDQSHCSSPWAGPSSEGGSEP
QEKGPRPKACRKRRLPNKELSKELSKALNQEIQKTEDCLANENRQPLKVEPESENEEPKR
SFRNGSDLGGERPHLWTKEINGTPWELRHFYPSQITPLGFNRSSPGTRPLPPRSPPKCVQ
MERHVIRPPPISPPPDRLPLVDGKTHAVQREVWVKIFGHVTHKELCVCMRVCKTWNRWCC
DKRLWTIIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLSWLINRLPGLRVLLLS
GCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNVVD
LRLAGLDITDASLRLIIRHMPVLSQLDLSYCNHVNDQSVNLLTAAGTTTRDSLTEINLSV
CNRVTDHSLTFFKRCGSICHIDLRYCKQVTKTACEQFIAEMSVSVQFGLKEDKLLQKLG
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcactgagtgcagatgaagaggattatgaatcagaatctgaacagcagcat
gcagccaaccggccaaagcccaagatggggacgtcagcagcggtcaagctgccgtccaat
cgcagtgcgtctggcgccagacgcaggagaacacgctgccgaaagtgtgaggcgtgcctc
cgaaccgagtgtggagactgtcacttctgtaaagacatgaagaagtttggaggaccaggg
cgcatgaagcagtcctgtatcatgaggcagtgcattgcacctgtcctgccccacacggct
gtgtgtgttgtgtgtggagaagcaggtaaggaggactccctggaggaagaggaggacaag
ttcaacatcatgctcatggagtgctccatctgcagtgagattgttcaccccaactgctta
aaggttaaagatgcgtctggcgtggtgaatgatgaacttcccaactgttgggaatgtccc
aaatgcaactcagctgggaaaacaggaaaagtctgcaagcaaaaaaggggaccagggttc
aagtacgcgtccaacctccctggctctctgctgagggagcagaaggcggtcaaggaggag
ggcgagtccacctctacgtctacagtcaagaggaagcctgagagggatgagactcccaga
cacagacctgaggaatgggagccccttcacagacaaccccctgtcctgtcccccagcacc
ctgcctcggcccagacctgaggacaaactgaggaagaagagaaagctcttcgacgatgac
tacgaagaggactttgatgtgaggaagaagggaaagtcagatggacatctgttcattaat
cagatcaagactgaagaggaggaggaggtagatgaagaggagaaggcctctctgtaccgg
cgaggcctggagaggagagggcgtttaagagataccgaggaggaggcagaggacggggat
gacgaggacacaaagacaagcctgcccaggcctcctctcaaaacttctgttctagacagt
gaccagtctcactgcagctctccatgggctggccccagtagcgaggggggcagtgaaccc
caggagaagggcccacgtcccaaagcgtgccgcaaacgccgattaccaaacaaagagctg
agcaaagagctgagcaaagcactgaaccaggagatccagaagaccgaggactgccttgcc
aatgagaaccgccagcccctgaaggtggagccagagagtgagaatgaagagccaaagagg
agcttccgcaatggcagtgacctaggaggggagcggccacacctctggaccaaggaaatt
aacggcactccctgggagctgcgccacttctaccccagccaaatcacccctctgggcttc
aacaggagctcccctggcacccggcccctgcccccacgctccccacccaagtgtgtccaa
atggagcgccacgtcatccggccgccccccatcagccccccaccggatagactgcccctg
gtggacgggaaaacccacgcggtgcagcgagaggtctgggtgaagatcttcggacacgtc
acacacaaggagctgtgtgtctgcatgcgtgtctgcaagacatggaaccgatggtgctgt
gataaaagactgtggaccataattgatctgaaccgctgtaaatctattactccccttatg
ctgagtggcatcatccgcagacagcccctctcactggacctcagctggaccaacatctcc
aagaagcaactaagctggcttataaaccgcttaccgggtctgcgggtgttgctgctctca
ggttgctcatgggtggctgtgtctgccctctgcacctctagctgccctctgctgcgcacc
cttgatgtgcagtgggtggaggggctcaaagatgcccagatgagggacctgctctcgcct
ccgaccgacaacagaccaggccagttggacaaccgttgtaagctgaggaacgttgtggac
ttgcgtctggccggactggacatcacagacgcctctctgcgtctgattatcagacatatg
ccggtactttcacaactggacctgagctactgcaaccacgtcaacgaccagtcggtcaac
ctgctgacggccgcagggaccacaaccagagactccctcacagagatcaacctgtcagtt
tgtaatagggtgacagaccattcccttaccttcttcaagcgctgtgggagcatctgtcac
attgacctacgctactgcaaacaggtgaccaagacggcctgtgaacagttcatagcagag
atgtccgtgagtgtacagtttggcctcaaagaggacaaattactgcagaaactcggctag
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