Salvelinus sp. IW2-2015 (Arctic char): 111962521
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Entry
111962521 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-1-like
KO
K04858
voltage-dependent calcium channel alpha-2/delta-1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04010
MAPK signaling pathway
salp04260
Cardiac muscle contraction
salp04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
111962521
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
111962521
04261 Adrenergic signaling in cardiomyocytes
111962521
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
salp04040
]
111962521
Ion channels [BR:
salp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
111962521
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA
dCache_1
VWA_3
VWA_2
Cache_3-Cache_2
VWA_CoxE
DUF2201
Motif
Other DBs
NCBI-GeneID:
111962521
NCBI-ProteinID:
XP_023841434
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All DBs
Position
LG4q.1:29:74226189..74476376
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AA seq
1089 aa
AA seq
DB search
MNVRACVWTGSWRLAMDTYRPHAVLILLLLSSDICLPSQFPTQLIIKEWVDQMQIELVTL
ADMASAGKNLTQIFLDNQNLYTVESNDAEELVARAARNIEQLLLKRAAALETLATSAENF
QMEHQWKDEYADGDIVYYNAKDNLEVNETEGRKNRIRPAFKEDMLFKRLTSHNHTAVHIP
TDIYDGSNIVLNELNWTEALEGVFKKNREDDPTLLWQVFGSATGLARYYPASPWMDARKT
PSKIDLYDVRRRPWYIQGAASPKDMLILVDASGSVSGLTLKLIRTSVGEMLETLSDDDYV
NVVYFNTRVNNTACFDHLVQANVRNKKILKDAVQNISAKGITNYTKGFEFAFEQLYATNI
TRANCNKIIMLFTDGGEERASVILQKYNADKKVRIFTFSVGQHNYDKGPVQWMACANKGY
FYEIPSIGAIRINTQEYLDVLGRPMVLADQLAKQVQWTNVYLDALELGLVITGTLPVFNK
TKYKDESGLEIQNQLILGVMGIDVSLDDIKKLTPRYTIGPNGYYFAIDPNGYVLLHPNLQ
PKEPVTLDFLDAELENDVKVQIRRMMIDGNPGEETIDTLVKTQDERYIDRGVRTYTWAQV
NGTDYSLALVLPTYSEHYLQAKLGDTIRQAMAMDTLQVEMFDELGYTFIAPGEEYCKGLK
DNDNNTQFLLDFNQFIDRNTLEEPCKLPCNVTLVSRLLLDAGLSRDLYEEYWWGGILARF
VATDGGITRVYPRSAGEEWTENAETYDSSFYKRTLDNNIYIFTAPYFNKSRESGYESGIL
VSKAVDLNIDGVNLKPAVVGVKLNVSAWMSNFMNATIKVNCKDEICGCLKNDKHVDCVIL
DDGGFLLMSNQDEYITQIGQFFGEVDPVVMISLVNTSLYSFNKTYDYQSVCDPERDSKAA
AGPRSVYVPTIADMLSIGWWASTAAWSIIQQLFYGLIFPSFLEAGECXDDDMSANMFKES
CITEQTQYFFDNEERSYSGVLDCGNCSRCVCVXKLPHTNLVFLITDAKATADVCXPRPLR
QAEQPSQGPDPCELAQNPRYRKGPDVCFDNNIDEDDSDCGGGTSLSPTLWPMLGLQLLLL
WLLTGFRHS
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgcgtgcgtgtgtttggacggggagttggcgcctggcaatggacacctacaga
ccacacgccgtgttgattttactgttattatcgtcggatatttgtctgccgtcgcagttt
ccaacacaactaataataaaggaatgggtggatcagatgcagatagagctggtgaccctg
gcagacatggccagcgccgggaagaacctcacacagatcttcctggacaaccagaacctg
tacacagtagagtcgaatgatgctgaggaactagtggctagggcagccaggaatatagaa
cagctgctactgaagagggctgcagctctggagactctggccacatctgctgagaatttc
cagatggaacaccagtggaaggatgagtatgcggatggtgacattgtttactacaatgca
aaggacaatttggaggtgaatgagacagagggtcggaagaaccggatcaggccagccttt
aaggaagatatgttgtttaaacgcctcacctctcacaaccacactgctgtacacatccct
actgacatctacgatggctccaacatcgtgctgaatgagttgaactggacggaggcactg
gagggtgtgtttaagaagaacagagaggatgaccctactctgctctggcaggtgtttggt
agtgctactggactggcccgatactacccagcctctccatggatggatgctcggaagacc
cccagtaagatcgacctgtacgacgtacgcaggagaccctggtacattcagggagctgcc
tcacccaaggacatgctgatcctagtggacgcgagtggcagtgtgtctggtctgactctg
aagctgatcaggacctctgtcggtgagatgctggagactctgtctgatgatgactatgtc
aacgtggtctatttcaacaccagggtgaataacacagcgtgttttgaccacctggtccag
gccaacgtgaggaataagaagatcctgaaggatgctgttcagaacatctctgctaaaggc
atcaccaactacaccaagggatttgagtttgccttcgaacagctctatgcaactaacatc
actagagccaactgtaacaagatcatcatgctgttcactgatggaggagaggagagagcg
tcggtcatactgcagaaatacaacgctgacaagaaggtgcgtatcttcaccttctcagtg
ggtcaacacaactatgataaaggtccagtccagtggatggcctgcgctaataaaggatac
ttctatgagattccctctattggagccatacgcatcaacactcaggagtacctggatgtc
ctgggcagacccatggttctagctgaccagctggccaagcaggtccagtggactaatgtc
taccttgacgctctggagctaggtctggtcatcacaggaaccctacctgtcttcaacaag
accaagtataaagatgaatcgggtttagagattcagaaccagttgatcctcggggtgatg
gggattgacgtgtcactagatgacatcaagaagctcacaccgcgctacactattggacct
aatggatattattttgccatcgaccccaatggatatgtactgctacaccccaacctccaa
cctaaggagcctgtcactctggacttcctcgatgcggaactggagaacgacgtcaaagtc
cagatcaggagaatgatgatagatgggaacccaggtgaagagaccatagatactctagtt
aaaactcaggatgagagatacatcgacagaggagtaaggacgtacacctgggctcaggtc
aatggaacagactacagcttggctctggtcctgcctacctacagtgaacactacttacag
gccaaactgggagacaccatcagacaggccatggccatggacactctgcaggtggagatg
tttgatgagttgggatacaccttcatcgccccaggtgaggagtactgcaaaggcttgaaa
gacaacgacaacaacacccagttcctcctggacttcaaccagttcatagacaggaacaca
ctggaagaaccatgtaagttaccatgtaatgtgactctggtcagtaggctgctgttggac
gctggtctctccagagatctctatgaagagtattggtggggtgggattctggccaggttt
gtagccactgatggagggatcaccagagtctatcccaggagtgctggagaggagtggaca
gagaatgctgagacctatgactcaagtttctacaagaggactctggataacaacatctat
atattcaccgctccatacttcaacaagagcagggaatcaggctatgagtcaggtattctg
gtgagcaaggcagtagacctcaacatagatggagtcaacctcaagccagctgtggtgggg
gtgaaactgaacgtctctgcctggatgagcaacttcatgaacgccaccatcaaagtcaac
tgcaaggatgaaatctgtggctgtctgaagaatgataagcacgttgactgtgtcatcctg
gatgatggcggcttcctgctgatgtccaatcaggatgagtatatcactcagattggtcag
ttctttggggaggtagacccagtcgtgatgatcagtctggtcaacacgtctctgtactcc
ttcaacaagacttacgactaccagtcagtctgtgatcctgagagagacagcaaggctgct
gcagggccacgatctgtctatgtgcccactatagcagacatgctgagtataggttggtgg
gcctccactgctgcctggtcgataatacagcagctcttctacggtctcatattccccagc
ttcctagaggcaggtgagtgttaggatgatgacatgtcagctaacatgtttaaggagagt
tgtatcacagagcagactcagtacttcttcgacaacgaagagagatcctactcgggagtc
cttgactgtggaaactgctccaggtgtgtgtgtgtctagaagctgccccacactaacctg
gtgtttctgatcactgatgccaaggccactgctgatgtctgtnaccccagaccactaaga
caagctgagcaaccctcccagggtccagacccctgtgagctggctcagaaccccagatac
aggaaaggacctgacgtgtgtttcgacaacaacatagacgaggatgattctgactgtggg
ggcgggacctctttaagccccaccctctggcccatgttggggctccaactactgctgctg
tggctcctcactggcttccgacattcatga
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