Salvelinus sp. IW2-2015 (Arctic char): 111963336
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Entry
111963336 CDS
T05762
Name
(RefSeq) homeobox protein SIX4-like
KO
K15615
homeobox protein SIX4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111963336
Transcription factors [BR:
salp03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
111963336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
111963336
NCBI-ProteinID:
XP_023842467
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All DBs
Position
LG4q.2:complement(12640601..12647666)
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AA seq
677 aa
AA seq
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MSSSSGEVTISNNIKKENVKTDKRDCIKLLALDTAELSMERATSNTDAVHSELLVSAASS
LAFSPEQVACVCEALQQGGNVDRLARFLWSLPQSDLLRGNESILKAQALVAFHQARYQEL
YSVLENHNFSPFNHSSLQDLWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDGEE
TVYCFKERSRNALKDLYKQNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSEAQ
SKSESDGNHSTEDESSKGQEELSPRPLSNSSDGTMTHGALPLQTGSLDSGVIIQQIGDIK
IPPVSSSEVLFNRNLVTSNRSTVFHNGGSSYLQAPSNILFNGLNLGIQPLAFNPLRPSGG
VLMGGSGVDMQMQAGQEKGLGGSSVDYASYSGCVNGAEVKLEGVYSMAAQNGGSSVLTFS
SSSGALQLGGYSLVHVPSGVSNGDGTSLLNSNLGLPLQLPSDSSSLSQGTIQMNNVAVSS
SSEDSYHHQHHQDKLAMAPMHPSTVLYSMGNTGQTSIKKEPLEGGGGGGVYSYHHGLHLD
PSGQLSYSSDPLTSEEVPSSQGSSSDVTTVSSSSPEPEVYTSLTVSTPLMAQTDPNRHQL
QPGEYLRGHNSQPVPSSHLLGPGMNNNYMSVSESKVDASGGGVNEMVRVMCGEMEPGEEK
DLAKLQTVQMDEDMADL
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcttcaggagaagtcacaatttcaaataacatcaagaaggaaaatgtgaag
acggacaagcgagattgcatcaagcttctagcgctggataccgcggagttgtctatggag
cgcgcaacttcgaacactgatgcagtccacagtgaacttctggtgagcgcggcttcctcg
ctggcattctccccggagcaagtggcgtgcgtctgcgaggctttgcagcagggaggcaat
gtggaccggctggccaggtttttatggtccttaccacagagtgacctgctacgtggcaac
gaaagcatcctgaaagcccaagctcttgtcgcttttcatcaagctcggtaccaggagctc
tacagtgttttggagaaccacaacttcagtccattcaatcactcctcgctgcaagacctc
tggtataaggcacggtacacggaggcagagaaagcgcgggggagacccctgggcgccgtg
gataaatatcgcctgcggagaaagtacccactaccccggactatctgggacggggaagag
acagtatactgcttcaaagagaggtcccgcaacgcgctgaaggatctatacaagcagaat
agatacccctctccagccgagaaaagaaacctcgctaaaatcacgggactctccttgacg
caggtcagcaactggttcaaaaacaggagacagagggacagaaacccgtccgaagcacaa
tcaaaaagtgaatctgatggcaaccacagcacagaggatgagtctagtaaagggcaggag
gagctctctccacgccccctctccaattcatctgacgggacgatgacccatggggccctc
cccctgcagacagggtctctggacagtggtgtaatcatccaacagattggagacatcaag
ataccccctgtatccagcagtgaggtgctcttcaacagaaacctagtgacaagtaaccgc
tccactgtcttccataacggtggctcgtcttacctccaggcccccagcaacatcctgttc
aatgggctcaacctgggcatccagcccttggccttcaaccccctgcggccctctgggggg
gtcctgatggggggctctggtgtggacatgcagatgcaggcaggccaggagaaggggctg
ggtggctccagtgtggactacgcctcctactctggctgtgtaaacggagcagaggtgaag
ctggagggggtttacagcatggcagctcaaaatggcggctcgtctgtcctcacgttcagc
tcgtcctcaggggcgctccagctgggcgggtacagtctggtccacgtgcccagcggcgta
tccaacggcgacgggacgtcactgctcaacagcaacttgggtcttcctctgcagctcccc
tctgactcctcatcactctcacaaggtacaatccaaatgaacaatgtagcagtcagttct
tctagtgaggactcctaccaccaccagcaccatcaggacaagctggccatggcccccatg
caccccagcacggtgctctacagcatgggcaacactggacagacctccatcaagaaggag
cccctggagggtggtgggggcggaggggtgtactcctaccaccatggccttcacctggac
cccagtgggcagctcagctactcttcagacccactaacctcagaggaggtcccctccagc
cagggctcctcctctgacgtaaccaccgtcagctcctccagtccagagcctgaggtctac
accagcctcaccgtcagcacccctctgatggcccaaacagaccctaacagacaccaactc
cagcctggggagtacctcaggggccacaactcacaacctgtcccctcctcacaccttctg
ggccctggcatgaacaacaactacatgtctgtgtcggagagtaaggtggacgctagtggt
ggtggggtgaatgagatggtgcgggtcatgtgcggggaaatggagccgggggaggagaag
gacctggccaaattacagacagtgcagatggacgaggacatggctgacctttaa
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