Salvelinus sp. IW2-2015 (Arctic char): 111978889 Help Entry 111978889         CDS       T05762                                  Name (RefSeq) roquin-1 isoform X1   KO K15690   RING finger and CCCH-type zinc finger domain-containing protein Organism salp  Salvelinus sp. IW2-2015 (Arctic char) Brite KEGG Orthology (KO) [BR:salp00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:salp03000]     111978889    04121 Ubiquitin system [BR:salp04121]     111978889 Transcription factors [BR:salp03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     111978889 Ubiquitin system [BR:salp04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     111978889 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf_CCCH_4 Prok-RING_4 FYVE Baculo_IE-1 zf-RING_6 Motif Other DBs NCBI-GeneID:  111978889 NCBI-ProteinID:  XP_023864903 LinkDB All DBs Position LG19:complement(29794532..29818634) Genome browser AA seq 1110 aa AA seqDB search MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD IEQLPVNTALLQLVGGQVPKVQPVALITSPEDSQHYEEARQCVEELALYLKPLSNNRGVG LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGLALSRKVLVLFVVQRLEPRFPQASKT SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNQLRPHLELL ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSSGLLSDDCLPLDMGVTRKPS PLTNGSAGHPMPQLITRGTDAVTYDLLCKPKMDCGSSSSPGSPPDFLDSGPKQGFLQPPL AMGHPRGPGDPMPKQMPVGVMPRGPQMYPQQLPDMYYSDSRPLPSASQYEPSQYPQGYPY QQPPQYSTQRYIRNLPAPSEPAGPPYQDPYPGYGPPERPYSAPHSGPPYSYLPHYDTRGR HGPYPGPQPYPPQRDDMVRMSPAPLDMPPNHHYQQEQAARERYPPEGYYPTGAQPQSMRS NVREQYRRSSQPSLDYLHHRRKELMAQLEERKVISPPPFAASPTLPQAFPSDYPPEYGEE SSKAFGKCRESDYAGQYSPWSCDTIGSYIVTKDAKPKDIMAPGAMEMMNVDGKGIRGEPS MEAQSRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMASAQGPKHMAA EFSYGHHGGWGGASYPSHQTGSSSQGHFSEKLSMPAQDREHLKIELQQVNQQITQQTQIH GMEREVSALAAQPSQPCQNQGQQGKWPGPAGVSSNAALVSSEQLSMELHQVEREIGKRTC RVAMDSQVAHEVQYKMKAAQNGQQDHKTQLEEIALALGEVSNGSSGLGQDGGVGGAMLSL TNKASSLSLCTEPGPGVSELQKNGVVHSCS NT seq 3333 nt NT seq  +upstreamnt  +downstreamnt atgcctgtgcaagccccacaatggacggagttcctgctgtgtcccatctgcacgcagacg ttcgaggagacggtgcggcggcccatctcgctgggctgtggccacaccgtctgcaagatg tgcctgaacaagctccaccgcaaggcctgccccttcgaccagacagccatcgccaccgac atcgagcagctgccggtaaacacagccctactgcagcttgtggggggacaggttcccaag gttcagccggtggccctgatcaccagcccagaggactcgcagcactatgaggaggctagg cagtgtgtagaggagctggccctctacctcaaacccctcagcaacaacagaggggtgggt cttagcagcacagcccagagcatgctgagtcggcccatgcagaggaagctggtgaccctg gtccactgccagctggtggaggaggagggccgggtgcgggccatgagggcagccaggtct ctgggggagcgcacggtcacagagctcatcctacagcaccagaacccccagcaattgtca tccaatttgtgggccgccgtccgggcccggggctgccagttcttgggcccagccatgcag gaggaggctctgaagctggtgctgctggctctggaggatggcttggccttgtccaggaag gttctggtgctgtttgtggtccagaggttagagccacgcttcccccaggcctccaagacc agcataggccacgtggtgcagctcctctacagggcctcctgcttcaaggtgaccaagcgc gacgaggactcgtccctgatgcagctgaaagaggagttcaggacgtatgaggcactgcgg cgcgaacacgactcccagattgtgcagatcgccatggagggtggcctccgcatcgctccc gaccagtggtcctccctgctctatggggaccagtcccacaagtcccacatgcagtccatc atcgacaagttgcaaacgccagcgtcgtttgcccagagcgttcaggagctgaccatcgcc ttgcagaggacgggcgaccccgccaaccttaaccagctccgaccacacctggaactactg gccaacatcgaccctagccccgacgccccccctcccacgtgggagcagctggagaagggt ctggtggcggtgaagacggtggtccacggcctggtggacttcatccagaaccacagcaag aagggagccgacccacaacagcctccccagcacagtaaatacaagacgtacatgtgtcgg gacatgaagcagaaggggggctgtccccgaggagccagctgtaccttcgcccactctcag gaggagctggagaagtaccgtaagatgaacaagcgtttggcggctcgcctccctggctca tccggcctgctgtcggatgactgtctccctctggatatgggggtgactcggaaaccctcg cccctcaccaacggctcagctggacaccccatgccccagctcatcacccgcggcacggac gccgtgacctacgacctgttgtgcaagcccaagatggactgcgggagcagcagctccccg ggatcgccccctgactttctggattcagggcccaaacaagggttcctccagcctcccctt gccatgggccaccccagggggccaggcgaccccatgcccaaacagatgcccgtaggtgtg atgccccgggggcctcagatgtacccccagcagctgcctgacatgtactactccgactca cgcccattgccctccgcctcccagtacgagccttcgcagtacccccaaggttacccctac cagcagcccccccagtactccacccagcgctacatccgaaacctccctgcccccagcgag cccgctggaccaccctaccaggacccctatcccggctatggccctcctgagcgcccttac tcagctccccactccggccccccctactcctaccttccccactatgacacccggggccgc cacggcccttaccctggcccccagccataccccccgcagagggacgacatggtccggatg agccctgctcccctggacatgccccctaaccaccactaccaacaggagcaggcggccagg gagaggtaccccccagaggggtactacccaactggggcccagccccaatccatgaggtcc aacgtcagggagcagtacagacgctcctcccagcccagcctggactacctgcaccaccgc cgcaaggagctgatggcccaactagaagagaggaaggtcatctccccaccacccttcgct gcctcccccaccctgccccaagccttccctagtgactaccccccagagtatggggaggaa agctccaaagcctttgggaagtgcagggagtcggactacgcgggccagtattctccctgg tcctgtgacactatcggctcctatattgtcaccaaggacgccaagcccaaagacatcatg gcgcccggcgccatggagatgatgaatgtggatggtaaaggtatacggggggagccctcc atggaggcccagtccagacggggagcggaggtgaaggacgacgaccccatcatccccttc ggcccccagcccaccgtgtcgcgcttcggggccatctcacgcacctccaagacaggctac cagacgacaggccccgtgcaggccatggcctccgcccagggacccaaacacatggccgcg gagttctcctatgggcaccacggaggctggggcggcgcctcctacccctcccaccagact ggctcctcctctcagggacacttcagtgaaaagctgtctatgccagctcaggacagagag catctgaagattgagctccaacaggtcaaccagcagatcacccaacagacccagatccat ggcatggagagggaggtcagtgccctggcggcacagccctcccaaccatgtcagaaccag ggccagcaggggaagtggcccggtccagcgggggtttccagcaacgctgccttggtgtcc agcgaacagctcagcatggagctgcaccaggtggagagggagattggcaagaggacctgc cgggtggccatggacagccaggtggctcatgaagtccagtacaagatgaaggctgcacag aatggccagcaggaccacaagacccagctggaggagattgctctggccctcggtgaggta tctaatggctccagcggtctaggtcaggatggtggtgtgggcggagccatgttgtcactg accaataaagcgtcttcgctcagcctgtgtactgagccggggcccggagtctcagagctg cagaagaacggtgtggtccattcctgctcctag

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