Salegentibacter sp. T436: AO058_08035
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Entry
AO058_08035 CDS
T04614
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
salt
Salegentibacter sp. T436
Pathway
salt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO058_08035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salt03019
]
AO058_08035
03400 DNA repair and recombination proteins [BR:
salt03400
]
AO058_08035
Enzymes [BR:
salt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AO058_08035
Messenger RNA biogenesis [BR:
salt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AO058_08035
DNA repair and recombination proteins [BR:
salt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AO058_08035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
DNA_pol_lambd_f
SinI
Motif
Other DBs
NCBI-ProteinID:
APS38826
UniProt:
A0A1L6R2S2
LinkDB
All DBs
Position
1836119..1838317
Genome browser
AA seq
732 aa
AA seq
DB search
MSLTEIDLHQQLKKYFGFSQFKGLQEEVITSIVNKNNSFVVMPTGGGKSLCYQLPALIEE
GTAIVVSPLIALMKNQVDAIRSISAEHGVAHVLNSSLNKTEVKQVKEDIANGVTKLLYVA
PESLTKEDHVEFLKQQKISFLAIDEAHCISEWGHDFRPEYRNLRSIIKRIGDNIPIIALT
ATATPKVQEDILKNLGIPDANTFKASFNRPNLYYEVRPKTKNVNADIIRFIKQHRGKSGI
IYCLSRKKVEELAQTLQVNGINAVPYHAGLDAKTRSRHQDQFLMEEIDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAYAETSISRRKFILHYFGEEFDSETGEGATMDDNVRYPKKQHEAGKEVE
LLLKTIKETKQLYKSKEVVKTLIGKSNAVILSHKTDAHPLFGKGKDRDGKYWMALIRQAL
VAGLLKKDIETYGVIKLTSKGEEFLENPTSFMMTDDHIFDSTTEAVPTASQSGGSGVDKT
LVKMLKDLRKKVAVKNEVPPFVVFQDPSLEDMAIKYPVNIEELTNIFGVGENKAKKFGKE
FVELIQRYVDENEIVRPDDLVVKSTGANSALKLYIIQNVDRKLPLDDIASAKGMEMKEFI
KEMEAIVYSGTKLNINYWIDDILDEDQQEEIHEYFLEAETDKIDEAIQEFDGDYDDEELR
LYRIKFISEVAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgacggaaattgatttacaccaacagctaaagaagtactttgggtttagtcaa
ttcaaaggccttcaggaagaggtgattaccagtatagtgaataaaaataattcgtttgtg
gtaatgccgaccggaggagggaaatccctatgttaccaactccctgcgttgattgaagaa
ggaacggcaattgtggtttcgccccttatcgctttaatgaagaaccaggtagatgctata
cgtagtatttctgcagagcacggcgttgcgcatgtgctaaattcctctttgaataaaacc
gaagtaaaacaggttaaggaagacatcgctaacggtgttaccaagctgctttatgtagca
cctgaatcacttaccaaagaagatcatgttgagtttttaaaacagcaaaagatttctttt
ttggctatagatgaggcgcattgtataagtgaatggggtcacgattttagaccagaatat
cgaaatttacgaagtatcataaaacgtataggcgataatattccaattattgcccttacg
gctacagcgactccaaaagtacaggaagatattttgaagaatcttggtattccagatgca
aatacctttaaagcgagttttaaccgaccgaatttatattacgaggtacggccaaaaacc
aaaaatgttaatgcggatattatccgttttatcaaacagcaccgcggtaaatctgggatt
atctattgtttaagcaggaaaaaggttgaagagctcgcacaaacactgcaggttaacggg
attaatgccgtaccctaccacgcggggctggatgccaaaacccgaagcagacaccaggac
cagtttcttatggaagaaattgatgttgtggtggctactattgcctttgggatgggaata
gataaaccagatgttcggtttgtgattcaccatgatattccaaaaagtatagaaagttat
taccaggaaaccggtcgggcaggaagagatggtggcgaaggccattgtttggctttctat
tcttataaagatattgaaaagctcgaaaaatttatgagcggaaaaccagtagccgaacag
gaaattggtcacgctttacttcaggaggtagttgcctatgcagaaacttccatttcccgc
cgaaagttcattttgcattattttggggaagagtttgacagcgaaaccggcgaaggcgcc
actatggacgataacgttaggtatcctaaaaagcaacatgaggctggcaaagaggtagaa
ttacttttaaaaacaataaaagaaacaaagcaattatacaaatctaaagaagttgtaaaa
acacttataggaaaatctaatgcggttattttatcacataaaaccgatgctcacccactg
tttggaaagggaaaagaccgggatgggaaatactggatggctttaattaggcaggctttg
gtagccggtttattaaagaaagatatagaaacctatggcgtaataaaacttacttctaaa
ggagaagaattcttagagaatccaacttcttttatgatgacagatgatcatatttttgat
agtactactgaagctgttcctactgcaagtcagtcgggaggttctggggtcgataaaacc
ctggtgaaaatgctgaaagatcttcggaaaaaagtagcagtaaaaaacgaggtgcctcct
tttgtagttttccaggatccttcgctggaagatatggctataaaatatccggtaaatatt
gaagagcttaccaatatttttggagtaggcgaaaacaaggccaaaaagtttgggaaagag
tttgtagaacttattcagcgttatgtagatgaaaatgagattgttcgtccagacgatttg
gtggtgaaatctaccggagcaaattcagctttaaaattatatataattcagaacgtagac
cgcaaattacctttagatgatattgcttctgccaaaggaatggagatgaaggaattcatc
aaagaaatggaagcaattgtttacagcggaaccaagttgaatataaattactggatagac
gatattttagatgaagatcagcaggaagaaattcatgaatattttctggaagctgaaacc
gataaaatagatgaagccatccaggaatttgatggcgattatgacgatgaagaacttagg
ttataccgcattaaatttataagtgaagtagcgaattag
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