KEGG   Sinorhizobium americanum: SAMCFNEI73_pB0496Help
Entry
SAMCFNEI73_pB0496 CDS       T04621                                 

Definition
(GenBank) ATP-dependent DNA ligase YkoU
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
same  Sinorhizobium americanum
Pathway
same03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:same00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SAMCFNEI73_pB0496
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:same03400]
    SAMCFNEI73_pB0496
Enzymes [BR:same01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SAMCFNEI73_pB0496
DNA repair and recombination proteins [BR:same03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SAMCFNEI73_pB0496
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: APG93692
UniProt: A0A1L3LUE4
LinkDB All DBs
Position
B:complement(543076..545916)
Genome map
AA seq 946 aa AA seqDB search
MGAACHLEGGAETNREHSSLCREINYFNWPGAYVRETPDRPRRCRLVSFDNQEADVGAAA
RAAGGCREMDDNLSKYRAKRDFKKTSEPSGEAQVKPSNRRRFVIQKHDATRLHYDLRLEL
DGVFKSWAVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEP
EGRKSPEEALKKGDFKFTLHGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHHDDHSVEENG
AAVLEENPTSVASGRSMEQIAEGEGRKPRPFMMAKANVEADAVWDSKHGLAADERKKRSR
KDVVTSTAADLPHFIAPQLCETLSRPPAGADWLHEIKFDGYRIQMRVAEGKVTLKTRKGL
DWTAKYPETADAASELPDCIIDGEICALDDNGAPDFAALQAALSEGKTGDLVYFAFDLLF
DGGEDLRSTRLLERKERLENLLTDTGDDPRIRYVEHFESGGDAVLRSACKLHLEGIISKQ
MDAPYQSGRTDTWAKSKCRAGHEVVIGGYAKTNGKFRSLLVGVHRGDHFVYVGRVGTGYG
AKKVQTLLPRLKGLETARSPFTGIGAPKKQAEVVWVKPELVAEIEFEGWTADGLVRQAAF
KGLRQDKPAKEVEAEKPATPAKTHTSEPAPSAKTRAVHRKGAKSEVMGVLISSPGKPLWP
DAGDGEPVTKEDLARYHEAVGTWLIDHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLL
ELVKVFGDRKPYLQIDRIEGLAAIAQIGGIELHPWNCEPGKPEVPGRLVFDLDPGPDVPF
AAVVSAAREMRDRLDELGLVSFCKTTGGKGLHVVTPFAVNKRKPLSWAEAKGFAHDVCLE
MARDNPDLYLIKMSKILRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWTQVKS
DLDPKRFTVRTVPALLAKTTAWQDYCDGERPLEQAIKRLGKSRRAA
NT seq 2841 nt NT seq  +upstreamnt  +downstreamnt
atgggcgcggcatgtcatctggaaggcggcgccgaaacaaatagagaacatagcagtctt
tgccgcgagatcaactatttcaactggcccggggcctatgtccgcgaaactccggaccgc
ccgcggcgttgtcgtcttgtgagcttcgacaatcaggaggcagacgtcggcgccgccgct
cgtgctgctggaggatgccgcgaaatggacgacaatctttccaaataccgtgccaagcgc
gatttcaaaaagaccagcgaaccgagcggtgaggcgcaggtcaagccgtcgaaccgccgt
cggttcgtgatccagaagcacgacgccacccggctccattatgacctgaggctcgagctc
gacggggtgttcaaatcctgggcggtgaccaaggggccgtcgctcgatccacatgacaag
cgcctggcggtcgaggtcgaagatcacccgctcgactatggcgacttcgaaggcacgatc
cccaagggtcaatatggcggcggcacggtgatgttgtgggatcgcggctactgggaaccg
gagggtcgcaagtcaccagaagaggccttgaagaagggcgacttcaagttcacgcttcat
ggcaagcggctacacggcagtttcgtcctggtgcggatgcgcaacgatcgcgatggcggc
aagcgaaccaactggctgctgatcaagcatcacgacgatcattcggtcgaggagaatggc
gcggcggtccttgaggagaacccgacttcggtcgcctccggccgcagcatggagcagatc
gcggagggcgagggccgcaaaccgagaccgttcatgatggcgaaggcgaatgtcgaggcg
gatgctgtctgggacagcaagcatggcctggcggccgacgagcgcaagaagagatcgcgg
aaggatgtcgtgacctccacggcagccgacctgccgcacttcatcgcgccgcagctctgc
gagacgctttcgcggccgccggccggtgccgactggctgcatgagatcaagttcgacggc
tatcggattcaaatgcgcgtcgccgagggcaaggtgacgctgaagacgcgcaaggggctc
gactggaccgcgaaatatccagagaccgctgatgctgcatccgaactgcccgattgcatc
atcgatggcgaaatctgcgccctcgacgacaatggcgcaccggatttcgcagcactccag
gccgcgctctcggaaggcaagaccggtgaccttgtctatttcgccttcgacctgctgttc
gatggcggagaggatttgcggtcgacgcgcctgctcgagcgaaaggagcggctggaaaac
cttctcaccgataccggcgatgatcctcgcatccgctacgtcgaacatttcgaatcgggt
ggcgacgccgtgctgcgctccgcctgcaagctgcacctcgagggcatcatctcaaagcag
atggacgcaccgtatcagtccggccgcaccgacacttgggcgaagtcgaaatgccgggct
ggacacgaggtggtgattggcggttacgccaagaccaacggcaagttccgctctctcctg
gtcggcgttcaccgcggcgatcactttgtctatgtcggccgtgtcggaaccggctacggc
gccaagaaggtgcagacgctgcttccgagacttaagggactggagacggccagatcgccg
ttcaccggtattggcgctccgaagaagcaggccgaggttgtctgggtgaagcccgagctt
gtcgctgaaatcgaattcgaaggttggactgctgacggccttgtccgtcaggcggccttc
aaaggtctgcgccaggacaagccggcgaaagaggtcgaggccgagaagccggcgacaccc
gccaagacccacacatccgagccggcgccgagcgcaaagacgagggccgttcaccgcaaa
ggcgcgaagagcgaagtaatgggcgtcctgatctccagtcccggcaaaccgctctggccg
gacgccggcgatggcgagccggtcacaaaggaagaccttgcccgctatcatgaagctgtc
ggcacctggctcatcgatcatatcaagggacggccctgctcgatcattcgagcgccggac
ggcattggcggcgagcagttctttcagcgacatgcgatgcccggcacgtccaatctgctg
gaactggtgaaggtcttcggcgacaggaagccctaccttcagatcgaccggatcgagggg
ctcgcggcgatcgcccagatcggcggtatcgaattgcatccgtggaactgcgaacccggc
aagccggaagtgcccggccgtctggtgttcgatctcgatcctggtcccgacgtgcctttt
gctgctgtggtttcggccgcgcgcgagatgcgcgatcggctggatgaacttggcctcgtc
agtttctgcaagaccacgggcggcaaagggctgcatgtcgtcacgcccttcgcggtgaat
aagcgcaagcctctgtcatgggccgaggccaagggattcgcgcatgatgtctgccttgag
atggctcgcgacaatcccgacctctatctcatcaagatgagcaagatccttcgcggtggc
cgcattttcctcgattatctccgcaacgatcgcatggcgaccgctgtggcgccgctctcg
ccgcgcgcgcggcccggcgccacagtctcgatgccgctcaactggacgcaggtgaagtcc
gatctcgatccgaagcggtttaccgtccgcaccgtgccggcgctgcttgcgaagaccact
gcctggcaggactattgtgatggcgagcgtccgctcgagcaggcgatcaagcgcctcgga
aaatcaagacgggccgcgtga

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