Sandaracinus amylolyticus: DB32_002688
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Entry
DB32_002688 CDS
T03935
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
samy
Sandaracinus amylolyticus
Pathway
samy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
samy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DB32_002688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
samy03019
]
DB32_002688
03016 Transfer RNA biogenesis [BR:
samy03016
]
DB32_002688
Enzymes [BR:
samy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DB32_002688
Messenger RNA biogenesis [BR:
samy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DB32_002688
Transfer RNA biogenesis [BR:
samy03016
]
Prokaryotic type
tRNA degradation factors
DB32_002688
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AKF05539
UniProt:
A0A0F6SEP2
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All DBs
Position
3122557..3124959
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AA seq
800 aa
AA seq
DB search
MSTTKSIGREQVMNALRAGGGRSLHVMEIVQILGAPKSARDEVRDRLQDLKELGLAKELP
GNRYKVGPGRKHAAPPPPEAFVTKPRAKREAEQEAAERFEKPRAPGGPAVTGWLTITPRG
FAFVAADDGGPDVFVSARSLANAMHGDRVEVSARRTEKGREGEVLRIVDRGLLRIAGRLT
RARRVYLIETHDARLPEVFRVSGTLPLETEPGMDVVAQITKYPEFPGEVPEARVLRVLGP
RGSAEVEIAKILIREGVVEEFPEDVVQEALGFPAQVPDHDIREREDLRHLDLVTIDPEDA
RDHDDAVWAEQTPDGFRVIIAIADVSHYVRDGSAIDREALTRGTSIYLPGRAIPMLPPEL
STNLASLVPDEDRLTLAVEVRLGKLGKILSHRLIEGVMRSKARISYGGAARALGLTEDAP
RQESAEQHLPLLKVLHQISRRLRALRNRRGALGFELPEAKVLLDKSGEPRDVIRSRSDAG
IKEAYEIVEDLMLLANEVVAEDLTRRKVPAIFRVHGKPDPHKVETFAAVAEAFGHALEED
AAESPKKLQKFLERIAGTPHAQSLGFLLLRAMQQATYDTRNLGHFALAARDYLHFTSPIR
RYPDLAVHRVVRALARGERIEAAALREKLQQQAQQSSRMERRAMTVERESVNLYRCLLMK
NRVGEEFEGTITGVTEHGLSVALDLPFVETRVPIERLGEDYYELDRLGIRLVGRRSGHSF
ALGGRLTVRLESVVIERREMVAVPTTLPEARRAERRRTELPRAHAEEPPRRERPSSRAPR
PSSRPQKPTKHRDRGPRRSR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgacgaagtcgatcggccgcgagcaggtgatgaacgccctgcgcgcgggcggc
ggacgcagcctgcacgtgatggagatcgtgcagatcctcggcgcgccgaagagcgcgagg
gacgaggtgcgcgatcgcctgcaggacctgaaggagctcgggctcgcgaaggagctgccg
ggcaatcgctacaaggtcggcccggggcggaagcacgcagcgccgccgccgcccgaggcg
ttcgtgacgaagccgcgcgcgaagcgcgaggccgagcaggaggccgcggagcgcttcgag
aagccgcgcgcgccgggcggcccggcggtcacggggtggctcacgatcacgccgcgcggc
ttcgccttcgtcgcggcggacgacggcggccccgacgtgttcgtgtcggcgcgcagcctc
gcgaacgcgatgcacggtgatcgcgtcgaggtcagcgcgcgacgcaccgagaagggccgc
gagggcgaggtgctgcgcatcgtcgaccgcggtctgctgcgcatcgcgggacggctcacg
cgcgcgcgccgcgtgtacctgatcgagacgcacgacgcgcgcttgcccgaggtgttccgc
gtgagcggcacgctcccgctcgagaccgagccgggcatggacgtcgtcgcgcagatcacg
aagtaccccgagttcccgggagaagtgccggaagcgcgcgtgctgcgcgtcctcggcccg
cgcgggtcggccgaggtcgagatcgcgaagatcctgatccgcgagggggtcgtcgaggag
ttccccgaggacgtcgtccaggaggcgctcggcttccccgcgcaggtgccggaccacgac
atccgcgagcgcgaggatctgcgtcacctcgatctcgtcaccatcgatcccgaggacgcg
cgcgatcacgacgacgcggtgtgggccgagcagacgcccgacggcttccgcgtgatcatc
gcgatcgccgacgtctcgcactacgtgcgcgacggcagcgcgatcgatcgcgaggcgctc
acgcgcggcacgtcgatctacctgccgggccgcgcgatcccgatgctgccgcccgagctc
tcgacgaacctcgcgtcgctcgtgcccgacgaggaccgcctcacgctcgccgtcgaggtg
cgcctcggcaagctgggcaagatcctctcgcatcgcctcatcgaaggcgtgatgcgctcc
aaggcgcgcatcagctacggcggcgccgcgcgcgcgctcgggctgaccgaggacgcgccg
cgacaggagagcgcggagcagcacctgccgctcctgaaggtgctccaccagatctcgcgt
cgactgcgcgcgctgcgcaaccgacgcggcgcgctcggcttcgagctgcccgaggccaag
gtgctgctcgacaagagcggcgagccgcgtgacgtcatccgctcgcgcagcgacgcgggc
atcaaggaggcgtacgagatcgtcgaggacctgatgctcctcgcgaacgaggtcgtcgcc
gaggacctcacgcgccgcaaggtgcccgcgatcttccgcgtccacggcaagcccgatccg
cacaaggtcgagacgttcgcggcggtggccgaagcgttcggccacgcgctcgaggaagac
gccgcggagagcccgaagaagctgcagaagttcctcgagcgcatcgcgggcacgccgcac
gcgcagtcgctcgggttcctgctcttgcgcgcgatgcagcaggcgacctacgacacgcgc
aacctcggtcacttcgcgctcgcggcgcgcgactatctgcacttcacgtcgccgatccgt
cgttatcccgatctcgcggtgcatcgcgtcgtccgcgcgctcgcgcgcggcgagcgcatc
gaggccgccgcgttgcgcgagaagctccagcagcaagcgcagcagtcgagccgcatggag
cggcgcgcgatgacggtcgagcgcgagtcggtgaacctctatcgctgcctgctgatgaag
aatcgcgtcggcgaggagttcgagggcacgatcaccggcgtgaccgagcacgggctctcg
gtcgcgctcgatctcccgttcgtcgagacgcgcgtcccgatcgagcgcctcggcgaggac
tattacgagctcgatcggctcggcatccgcctcgtcggtcgtcgttcggggcactccttc
gcgctcggcggtcggctcacggtgcggctcgagtcggtcgtgatcgagcgccgcgagatg
gtcgcggtgccgacgaccttgcccgaagcacgtcgcgccgagcggcgccgcaccgagctc
ccgcgcgcgcacgccgaagagccgccgcgccgcgagcgtccgtcttcgcgcgcaccgcgt
ccctcgtcgcgcccgcagaagcccacgaaacatcgcgatcgcggcccgcgccgcagccgc
tga
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