Salinispora arenicola: Sare_4028
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Entry
Sare_4028 CDS
T00613
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
saq
Salinispora arenicola
Pathway
saq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sare_4028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saq03021
]
Sare_4028
03019 Messenger RNA biogenesis [BR:
saq03019
]
Sare_4028
Transcription machinery [BR:
saq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Sare_4028
Messenger RNA biogenesis [BR:
saq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sare_4028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
NACHT
PIP5K
VWA_2
Exo70_N
Motif
Other DBs
NCBI-ProteinID:
ABV99818
UniProt:
A8M2K9
LinkDB
All DBs
Position
complement(4579822..4581888)
Genome browser
AA seq
688 aa
AA seq
DB search
MSDTTDVTSDVSNVAGDATTAAPTRRRRSGTGLSAMLLPELQSLAASLGISGTARMRKGE
LISAITERQGGGAATGTPRPRAEVAAAAALAREEVHAEVRESGERPEAESRPAEQPAAGG
TTGRARGRRARAASEASEARVEARPEGAEAGDRAERGDRAERGDRAERGDRAERGDRAER
GDRAERGDRAERGDRAERGDRAERGDRAERGDRAERGDRAERGDRAERGDRAERGDRAER
GDRAERGDRAERGDRAERGDRNDRGQRDNDGDEENEGGGRRGRRSRFRDRRRGRGDRVDG
GDGGREPQVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDA
ITGAVRAAREGEQRRDKYNPLVRLDTINGMEPEEAKRRPEFYRLTPLYPQERLRLESEPH
ILTTRVIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEE
VTDMQRSVKGEVIAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYN
LAAPASGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSMADTVIFEEF
KGTGNAELKLDRKIADKRTFPAIDIHPSGTRKEEILLAPEELAIVHKLRKVLHSLDSQAA
LDLLLDRLKQSRTNIEFLMQIAKSTPGE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgacaccaccgacgtgacgtcggatgtttccaacgtcgccggcgatgccacgacc
gctgctcccacccgtcgtcggcgtagcggcacgggtctgtcggcgatgctgctgcctgag
cttcagagcctggctgcgtcgctcggcatctcgggcacggctcgcatgcgtaagggtgag
ctgatcagcgcgatcaccgagcgccagggtggcggggcagccaccggaacccctcgaccg
cgggccgaggtcgcggctgctgccgcgctcgcccgcgaggaggtccacgcggaggtccgc
gagtcgggcgagcggccggaggccgagtcacgtcctgcggagcagccagccgctggtggg
accaccggccgggctcggggccggcgtgcccgtgcggccagcgaggccagtgaggcccgt
gtcgaggcgcgaccagagggcgccgaggccggcgaccgggccgagcgtggcgatcgggcc
gagcgtggtgaccgggccgagcgtggtgaccgggccgagcgtggcgatcgggccgagcgt
ggcgatcgggccgagcgtggtgaccgggccgagcgtggcgatcgggccgagcgtggcgat
cgggccgagcgtggcgatcgggccgagcgtggcgatcgggccgagcgtggtgaccgggcc
gagcgtggcgatcgggccgagcgtggtgaccgggccgagcgtggtgaccgggccgagcgt
ggtgaccgggccgagcgtggtgaccgggccgagcgtggcgatcgggccgagcgtggtgac
cggaacgaccgcggccagcgtgacaatgacggcgacgaggagaacgagggtggcggccgg
cgcggccggcgcagccgattccgggaccgtcgtcgtggccgtggcgaccgggtcgacggc
ggcgacggtggccgggagccccaggtcagcgaggacgacgtgctcgttccggtggcaggc
atcatcgacgtgctcgacaactacgccttcgtccggaccaccggctacctggccggtccg
aacgacgtctacgtctcgatgtcccagatcaagcggtacggcctgcggcgcggtgacgcg
atcaccggtgccgtgcgcgcggcgcgggagggcgagcagcggcgggacaagtacaacccg
ctcgttcggctggacaccatcaacgggatggagcccgaggaggcgaagcggcggccggag
ttctatcgactcaccccgctctacccgcaggagcggctgcggttggagagcgagccgcac
atcctcaccacccgggtgatcgatctggtgatgccgatcggcaagggtcagcgggcgctc
atcgtttcgccgccgaaggccggtaagaccatggtgttgcaggcgatcgcgaacgcgatc
acccacaacaacccggagtgccacctgatggtggtgttggtggacgagcgcccagaagag
gtcaccgacatgcaacggtcggtgaagggcgaggtcatcgcggcgacgttcgatcgcccg
ccgcaggatcacaccaccgtcgccgaactggcgatcgagcgggcgaagcggctggtcgag
ctgggccacgacgtggtcgtgctgctcgactcggtgacgcggctcgggcggtcgtacaac
ctggcggcaccggccagtggtcggatcatgtcgggtggtatcgactccaccgcgctgtat
ccacccaagcggttcctgggcgcggcccgcaatatcgaaaacggcggctcgttgaccatc
ctcgccaccgcgctggtggagaccgggtcgatggcggacacggtcatcttcgaggagttc
aagggcaccggcaacgcggagctgaagttggaccggaagatcgccgacaagcgaaccttc
ccggctatcgacatccacccgtccggcacgcgtaaggaggagatcctgctcgcgccggag
gaactggccatcgtgcacaagcttcggaaggtgctgcactcgctggattcgcaggccgcg
ctggacctgttgctggaccgcctcaagcagtcgcgcaccaacatcgagttcctgatgcag
atcgcgaagtcgacaccgggggagtga
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