Salmo salar (Atlantic salmon): 106567455
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Entry
106567455 CDS
T04363
Symbol
rad50
Name
(RefSeq) RAD50 double strand break repair protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03440
Homologous recombination
sasa03450
Non-homologous end-joining
sasa04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106567455 (rad50)
03450 Non-homologous end-joining
106567455 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
106567455 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sasa03032
]
106567455 (rad50)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106567455 (rad50)
DNA replication proteins [BR:
sasa03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
106567455 (rad50)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
106567455 (rad50)
BRCA1-C complex
106567455 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
106567455 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
SbcC_Walker_B
AAA_15
ABC_tran
AAA_29
AAA_22
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
106567455
NCBI-ProteinID:
XP_013992207
UniProt:
A0A1S3LML8
LinkDB
All DBs
Position
ssa13:51744653..51790306
Genome browser
AA seq
1313 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQVISFFNPLTVLVGPNGAGKTTIIECLKYVTAGEFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFTDLNGEKVAVQRSMQATQKGKKTEFRSLEGVITR
IKHGDKVSLSSKCAELDREMISALGVSKAVLDHVIFCHQEESNWPLGEGKPLKNKFDAIF
SATRYIKVLETLRQLRLKQSNEVRECQVELKFLKLNKEKALEIRELLASKESQLASSKDA
VQKIEGQIEPLENRLVDIDENLGKVMKLDNDIKALDSRKKQMEEDNQELEEKMEQVFQGS
DEQLQEMYQNHQRTVKEKERRFTECQRELERAGRECQRLNRLQSDLLVEQGRLQLEADRH
AQNMKNRDSQVRALATYLEMEGYDRSPFNDRQLQSFNRQVKERLDQETEAANQVMRDIQE
KEAMKQQSIDEIRDKKTGLERTMELKKDLQVKKQQELRNIKSDLQRLEGSSTRLQELETE
LTKVERELESAVQSSNVDGLKAEVLELHKDKTELDLTQRRLDREMETLNTHTTTRTQMDM
LKKDKTDKEDQVRKIKSRHSEDLVSLLGHFPKKRELEDWIHAKSKEINSTREKLAKLNKE
LASGEQNKSHITAEIRRKEQQLASYEEKMFNVCGSQDFQQDLGKLQDDLEKTSKQRAMLA
GATAVYTQFISQLTEEGEPCCPVCQRIFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERRKDDMMALKPVRQSIAELQEKELPELRNRLQNVNRDIERLKGDVEEQETLLSTLMS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQQAAKLQGVDLSRTIQQVNQEKQETQHRLD
TMSSKMELKRKLIQDQQEQIQSLKSSMNETRAEKLQISSNMQKQQQLEEQCVEFTTEIQA
LHREIKEAKEQVSPLATTLEKLQQERLDLMERRKQRQEEGQEKINSIKDKVKSMAAFERE
ITRYTEEGKNDYKEQKEGELQETNTQVHEAEKQREKINRDSGNIRQDIDTQKVQERWLQD
NLTLRKRIEELKDVTKKREAVAKDMGNMQVLQLRNERRESERRVDDLKKNRSVALGRQKG
FEEEIIRFRKELREDQYGKADERFRDRMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSGAGVKRRTYNYRVVMVKGDTALDMRG
RCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQ
RNFQLLIITHDEDFVELLGRSNYVEHFYRIRKNMDQCSEITKCSVSSLSSYLH
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaattgagaagatgagcatcctcggtgtgaggagctttggagtggaagacaaa
gacaaacaagtcatatcattctttaatcccttgactgtgttagtgggacccaatggtgct
ggtaaaacgactatcattgagtgtctgaagtatgtaacagctggtgaatttcccccagga
agcaaagggaatacatttgttcatgatccaaaggatgctcatgagactgatgtgcgagct
cagatccgactgcagttcaccgatctaaatggagagaaggtggcagttcaaaggtccatg
caggcaacacagaagggcaagaagactgagttcagaagtctggagggggtcatcaccagg
atcaagcatggagataaggtgagcctgagctccaaatgtgcagagttggacagagagatg
atctcagcgctgggtgtgtccaaagcggtcctcgaccatgtcatcttctgtcaccaagag
gagtccaactggcccctgggagaagggaagcccctcaagaacaaatttgatgctatcttc
tcagccacaaggtacatcaaggtgctggagacgctgaggcagctgaggctcaagcagtct
aatgaggtgagagagtgccaggtggagctgaagttcctgaagctgaacaaggagaaagcc
ctcgagatcagggagctgcttgccagcaaggagtcccagctggcgtcctccaaagatgcc
gtacagaagatagagggccagatcgaacccctggagaaccgactggttgacattgatgag
aatctgggaaaagtgatgaagctcgacaacgacatcaaggctttagacagcaggaagaag
cagatggaggaagacaaccaggaactggaggagaaaatggagcaggtgttccagggctca
gatgagcagctgcaggagatgtaccaaaatcaccagaggacagtgaaggagaaggagagg
aggttcacagagtgccagagggagttggaacgagccgggagagagtgccagagactcaac
cgcctccagtccgaccttctagttgaacaaggtcgtctccagctggaggctgatcgccat
gcccagaacatgaagaatcgtgactcccaggtgagagccctggcaacctatctggagatg
gagggctatgaccggtcccccttcaatgacagacagctgcagagcttcaaccgccaggtc
aaagagagactcgaccaggagactgaggccgccaaccaggtcatgagggatatacaagag
aaggaggccatgaagcagcagagcatcgatgagatacgagacaaaaagactggtctggag
aggaccatggagctgaagaaagacctgcaggttaagaagcagcaggagctgagaaacatc
aagtctgacctgcagagactggagggctcctccacccggctgcaggaactggagacggag
ctcaccaaagtggagcgtgagctggagagcgcagtgcagagctccaatgtggatgggctg
aaggccgaggtgctagagctccataaggacaaaactgagctggacctcacacagcgccgg
ctggaccgtgaaatggagacccttaacacacacaccaccacacgcacacagatggacatg
ctcaagaaggataagacagataaagaagatcaggtgaggaagatcaagtcgaggcacagt
gaggatctggtgtccctgctgggtcacttccctaagaagagggagctggaggactggatc
cacgccaagtccaaagagatcaactccaccagggagaaactggccaagctcaataaggag
ctggcgtcgggggagcagaataagagccacatcacagcagagatcaggaggaaggagcag
cagctggccagctatgaggagaagatgttcaacgtgtgtggcagtcaggacttccagcag
gacctgggcaagctgcaggacgaccttgagaagacctccaagcagagagccatgctggcg
ggagccacagccgtgtacactcagttcatcagtcagctgacagaggagggcgagccctgt
tgccccgtgtgccagcgcatcttcccctcggaggccgagctccaggacgtcatcaacgac
atgcagtccaagctgcgcctggtccctgacaagctgaagaacaccgagcaggacctgaag
aggaaggagaggaggaaggacgacatgatggctctcaaacctgtcaggcagtctattgct
gagctacaggagaaggagcttcctgagctgaggaaccggctgcagaacgtgaaccgggac
attgagaggctgaagggggatgtggaggagcaggagaccctgctgtccactctgatgtca
gaggaggacacagccaaggcctgcctgcaggacatctccctcatggacagataccagctg
gacctgaaggatgtggagaggaagatagcccagcaagctgccaagctgcagggagtggac
ctgagccgcaccattcagcaggtcaaccaggagaaacaggagacccagcaccgcctggac
acaatgtccagcaagatggagctgaagcgtaaactgatccaggaccagcaggagcagatc
cagagcctgaagagcagcatgaacgagacccgagcggagaagctgcagatctccagtaac
atgcagaagcagcagcagctggaggagcagtgtgtggagttcaccactgagattcaggct
ctgcacagagagatcaaggaagctaaggagcaggtgtcccctctggccaccaccctggag
aagctgcagcaggagaggctggatttgatggagcgcaggaagcagaggcaggaggaggga
caagagaagataaatagcatcaaagacaaagttaaaagcatggccgcctttgaaagagag
attaccagatacacagaagagggcaagaatgattacaaagagcaaaaagagggggagctc
caagagaccaacactcaggtccatgaggcagagaagcaacgcgagaagattaacagagac
agtggaaacatcaggcaggacatagacactcagaaggtccaagagcgttggctgcaggac
aacctgacgttgaggaagcgcatcgaggagctgaaggacgtgaccaagaaacgagaggct
gtggcgaaggatatggggaacatgcaggtcctgcagctacgcaatgagcggagggagtct
gagcggcgcgtggacgacctgaagaagaaccgcagcgtagcactgggccgacagaagggc
ttcgaggaggagatcatccgcttccgcaaggagctccgcgaggaccagtacggcaaggct
gacgaacgcttccgggacaggatgatcgtcatgaggaccacagagctggccaacaaggac
ctggacatctactacaaggccctggaccaaaccataatgaagtttcacagtatgaagatg
gaggagatcaataaaatcatccgggacctctggcgcagcacataccgaggacaagacatt
gagtatgtggagatccgctctgatgtggatgagaattcttcaggggcgggagtgaagagg
aggacctataactaccgtgtggtgatggtgaagggagacacggcgctagacatgaggggt
cgctgcagtgccggccagaaggtccttgcctccctcatcatccgtctggctctggctgag
accttctgtctgaactgtggcatcctggccctggacgagcccacaaccaacctagacagg
gagaacatcgagtccctcgcacacgccctcgtggaaatcatcaagagccgctcgcgccag
cgcaacttccagctgctcatcatcacccatgacgaggactttgtggagctcctgggacgt
tccaactacgttgaacacttctaccgtattaggaagaacatggaccagtgctctgagatc
accaagtgcagcgtctcctccctcagctcctacctgcactga
DBGET
integrated database retrieval system
