Salmo salar (Atlantic salmon): 106576445
Help
Entry
106576445 CDS
T04363
Definition
(RefSeq) apoptotic protease-activating factor 1-like
KO
K02084
apoptotic protease-activating factor
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04115
p53 signaling pathway
sasa04210
Apoptosis
sasa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
106576445
04115 p53 signaling pathway
106576445
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
106576445
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
APAF1_C
NB-ARC
WD40
CARD
ANAPC4_WD40
Ge1_WD40
CARD_2
Nup160
AAA_16
NACHT
WD40_like
AAA_22
Utp8
Motif
Other DBs
NCBI-GeneID:
106576445
NCBI-ProteinID:
XP_014009105
UniProt:
A0A1S3N1A5
LinkDB
All DBs
Position
ssa17
AA seq
840 aa
AA seq
DB search
MAMMEEGARSCLLQSRSSLEQDIRASYLMDHMISDGVLTGDEEDRIRSKPTRKEQAAALL
ELLLRKDNQAYISFYNALVRESYGDLASLLHNSLPLISPEAEKSFSDGGTRYVQAVLSEG
GVPQRPVVFVSRPALVNRVREKLYRLQEPGWVTVFGMAGSGKSVLAAEAVRDHALITECF
PGGVHWLSIGQLDRSDLLVRIQSLCFRLEQQSQEKDPSSSLHRSPGSLEEAKERLRFLML
RRYPRSLLILDDIWDSSVIKAFDIQCRVLLTTRDRSLADCVSGSKSEVAVESGLEEDQAL
EILALYVNGKPQRLPEQARSIVRECKGSPLVVSLIGALLREFPDRWAYYLHTLQQKKFKR
IRKSSSYDYDALDQAMAASIQVLSDEHRELYIDLTVLEKDVKVPAKVLSVLWDLEPEEVE
DVLQDFVNKSLLFRDCHHRPYLYYLHDLQLDFLAEMNRSGLESLHTKVVRQYQQRYSQGP
PTSGDEECLYWFRFLTYHMAKANLTQELCSLMFSLDWVRTKAQIMGPAHLINDYVEYGAI
LDKENSEVRGHFQEFLSLNGHQLEQRPFPDVVQLALSQPDSSEVYRQALLQAQERATRGG
LYLDWMNKSSLKSLSRLVVQPHQGSIYAACFSHDGTKIASCGSSKTLRVFKSTSGEKMLE
IQAHDDEVLCCAFSPDDRLLATCSSDRKVKVWNVECGTLMRMFEEEHEEQVNHCQFTNTR
RRLLLATCSNDKFLNTKLWNINKPSSQNTMFGHLEPVNHCCFSPDDAYLSTSSSDGTLKL
WEVSSANEWKSIDVADMFPEQREQTAVMVKCSTWSADGRTIICAARNAVFVSVEEPALPC
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgatggaggaaggggcgcggagctgcctgcttcagtcacgctccagcctggag
caggacatcagggcttcctacctgatggatcacatgatcagtgatggcgtgctgacgggg
gacgaggaggacaggatcaggagcaagcccaccaggaaagagcaggcggcggccctgctg
gagctgctcctgaggaaggataaccaggcctacatctccttctacaatgccctggtccgc
gagagctacggagacctggccagcctgctccacaacagcctgcccctgatctcccctgag
gctgagaagagcttctcagatgggggcacccgctatgtccaggcggtgctgagtgagggc
ggcgtgccccagagacccgtggtgtttgtgagccggccagccctggtaaaccgggtcagg
gagaagctctaccgcttgcaggagcccggctgggttactgtgttcggcatggccggctcc
ggcaagtcagtcttggctgcggaggcagtccgagaccacgcactcatcacagagtgtttt
ccaggaggagtccactggctgtccataggccagctggaccggtctgacctgctggttagg
atccagtcactgtgtttccgcctggagcagcagagccaggagaaagacccctcgtcctcc
ctccaccggtctcctggctctctggaggaggccaaggagcgactacgcttcctcatgctc
cgtcgttaccccaggtcgttgctgatactggatgacatctgggacagctctgtgatcaag
gcctttgacatccagtgtcgagtactgctcaccacccgagacagaagcctagccgactgt
gtcagcggttctaagtctgaggtggcagtggagagtggtctggaggaagatcaggccttg
gagatcctcgccctgtatgtcaacgggaaaccccagagactcccagaacaggcccgcagc
attgtccgagagtgcaaaggctcccccttggtggtgtccctaatcggggccctgctgcgg
gagttcccggaccgctgggcctactacctgcacacgctccagcagaagaagttcaagcgt
atccgtaagtcgtcttcgtatgactacgatgcccttgaccaggccatggctgccagcatc
caggtcctgtctgatgaacacagggagctttacattgacctcactgtgctggagaaggac
gtcaaagtacctgccaaggttctgtcggttctgtgggatctagaaccggaggaggtggag
gacgttctccaggactttgtgaacaagtccctactgttccgtgactgtcaccaccggccc
tacctctactacctccacgacctccagctggacttcctggctgagatgaaccgctctggt
ctagaaagcctccacaccaaggtggtgcgtcagtaccagcagcgctacagccagggtccc
cccacctcaggagatgaagagtgcctctactggttcagattcctcacctaccacatggcc
aaggccaacctcacacaggagttgtgctctctgatgttctctctggactgggtcagaact
aaagctcagattatgggaccggctcatctcatcaatgactatgtggagtacggcgccata
ctggacaaagagaacagcgaggtgcggggccacttccaggagttcctgtctctgaacggc
caccagttggagcagcgtccgttccctgacgtagtgcagctggccctgtcccagccagac
tcctctgaggtgtaccgccaggccctgctgcaggcgcaggagagggccaccagaggggga
ctctaccttgactggatgaacaaaagtagtctgaagagcctgtctcgtctggtggtccag
ccccaccaggggtccatctacgctgcctgcttctcccacgacggcaccaagatcgcctcc
tgtggctccagcaagacactgcgagtgtttaagagcacctctggggagaagatgctggag
atccaagcccacgacgatgaggtgctctgctgcgccttctccccagatgaccgtctccta
gcaacctgctctagtgataggaaggtcaaggtttggaacgtggagtgtgggactctgatg
aggatgtttgaggaggaacacgaggagcaggtcaaccactgtcagttcaccaacacacgt
cgacgcctcctactggccacctgttccaacgacaagttcttgaacaccaagctgtggaac
atcaataaaccctcctcccagaacaccatgtttggtcatttggagcctgtcaatcactgc
tgtttctcccctgatgatgcctacctctccacctcttccagcgacggaaccctgaagctg
tgggaggtgtcctcagccaatgagtggaagtccatagacgtggcggacatgttcccggag
cagagagagcagactgcggtcatggtgaagtgcagcacctggtcagcagacggcaggacc
atcatctgtgctgccaggaacgcggtctttgtgagtgttgaagagccagccctcccctgc
tga
Salmo salar (Atlantic salmon): 106609566
Help
Entry
106609566 CDS
T04363
Definition
(RefSeq) apoptotic protease-activating factor 1-like
KO
K02084
apoptotic protease-activating factor
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04115
p53 signaling pathway
sasa04210
Apoptosis
sasa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
106609566
04115 p53 signaling pathway
106609566
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
106609566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
APAF1_C
NB-ARC
ANAPC4_WD40
CARD
Ge1_WD40
eIF2A
WD40_like
CARD_2
AAA_16
NACHT
Utp8
DUF3944
AAA_22
Motif
Other DBs
NCBI-GeneID:
106609566
NCBI-ProteinID:
XP_014063984
UniProt:
A0A1S3SI21
LinkDB
All DBs
Position
ssa07
AA seq
1265 aa
AA seq
DB search
MAMMEEGARSCLLQSRSSLEQDIRASYLMDHMISDGVLTGDEEDRIRSKPTRREQAAALL
ELLLRKDNQAYISFYNALVRESYGDLASLLHNSLPLVSPEAEKSFSDGGTRYVQAVLSEG
GVPQRPVVFVSRPALVNRVREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRDHALITEC
FPGGVHWLSIGQLDRADLLVRIQSLCFRLEQQSQEKDPSSSLHRPPGSLEEAKERLRFLM
LRRYPRSLLILDDIWDSSVLRAFDIQCRVMLTTRDRSLADCVSGFKSEVAVESGLEEDQA
LEILALYVNRKPQRLPEQARSIVRECKGSPLVVSLIGALLREFPDRWAYYLHTLQQKKFK
RIRKSSSYDYDALDQAMAASIQVLSEEHRELYIDLTVLEKDVKVPAKVLSVLWDLEPEEV
EDVLQDFVNKSLLFRDCHHRPYLYYLHDLQLDFLAEMNRSDLESLHTKVVRQYQQRYSQG
PPTSGDEECLYWFRFLTYHMAKANLTQELYSLMFSLDWVRTKAQIMGPAHLINDYVEYGA
ILDKENSEVRGHFQEFLSLNGHQLEQRPFPDVVQLALSQPDSSEVYRQALLQAQERATRG
GLYLDWMNKSSLKSLSRLVVQPHQGSIYAACFSHDGTKIASCGSSKTLRVFKSTSGEKLL
EIQAHDDEVLCCAFSPDDRLLATCSSDRKVKVWNVERGTLMRMFEEEHEEQVNHCQFTNT
RRRLLLATCSNDKFMNTKLWNINKPSSQNTMFGHLEPVNHCCFSPDDTYLSTSSSDGTLK
LWEVSSANEWKSIDVADMFPEQREQTAVMVKCSTWSADGRTIICAARNAVFVFDVETAAM
LLEIRTSRLSTVQYCHSCPSSNLVAIALSHYAVELWDIETSKKMADCSGHLSWVHGVQFS
PDGSLLLSCSDDQTVRVWETNRVHTSSAVCLKRDSDVLFNNGDITVVAADNRNRLQVRNG
RTGAVVFQSEDQTSRIRCTAICSQTSAVGLGREDGTIQVLEVPSGTSLATLQGHTRTVLH
CQFTPEGHTLITSSEDTTIRVWRWRTGECVVLEGHKEQVRCFSLLTTSPSETHLLSWSFD
GTIKVWDMSSGERLQDLVCHQGAVLACDVSPDGQLFATTSADKTAKVWTSASWECVRLLN
GHQDCVRSCKFSWDGRRLATGDDNGEIRLWNMKDGTLLKICSSDNKDAMDSLHGGWVTDL
HFSPDNTVLLSTGGYIKWWNVEKGEALQTFYPTGANLKRIHVSPDFSTFVTIDNIGILYI
LKKVE
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgatggaggaaggggcgcggagctgcctgcttcagtcacgctccagcctggag
caggacatcagggcttcctacctgatggatcacatgatcagtgacggcgtgctgacaggg
gatgaggaggacaggatcaggagcaagcccaccaggagagagcaggcggcggccctgctg
gagctgctcctgaggaaggataaccaggcctacatctccttctacaacgccctggtccgc
gagagctatggagacctggccagcctgctccacaacagcctgcccctggtctcccctgag
gctgagaagagcttctcagacgggggcacccgctatgtccaggcggtgctgagtgagggc
ggcgtgccccagagacccgtggtgtttgtgagccggccagccctggtgaaccgggtcagg
gagaagctctaccgcttgcagaaggagcccggctgggtcactgtgttcggcatggccggc
tccggcaagtctgtcctggctgcggaggcagtccgagaccacgcactcatcacagagtgt
tttccaggaggagtccactggctgtccataggccagctggaccgggctgacctactggtt
aggatccagtcactgtgtttccgcctggagcagcagagccaggagaaagacccctcgtcc
tccctccaccggcctcctggctctctggaggaagccaaggagcgactacgcttcctcatg
ctccgtcgttaccccaggtcgttgctgatactggatgacatctgggacagctcggtgctc
agggcctttgacatccagtgtcgagttatgctcaccacccgagacagaagcctagccgac
tgtgtcagtggttttaagtctgaggtggcagtggagagtggtctggaggaagatcaggcc
ttggagatcctcgccctgtatgtcaacaggaaaccccagagactcccagaacaggcccgc
agcattgtccgagagtgcaaaggctcccccttggtggtgtccctaatcggggccctgctg
cgggagttcccggaccgctgggcctactacctgcacacgctccagcagaagaagttcaag
cgtattcgtaagtcgtcttcgtatgactacgatgcccttgaccaggccatggctgccagc
atccaggtcctgtctgaggaacacagggagctgtacattgacctcaccgtgctggagaag
gacgtcaaagtacctgccaaggttctgtcggttctgtgggatctagaaccggaggaggta
gaggacgttctccaggactttgtgaacaagtccctactgttccgtgactgtcaccaccgg
ccctacctctactacctccacgacctccagctggacttcctggctgagatgaaccgctct
gatctagagagcctccacaccaaggtggtgcgtcagtaccagcagcgctacagccagggt
ccccccacctcaggagatgaagagtgcctctactggttcagattcctcacctaccacatg
gccaaggccaacctcacacaggagttgtactctctgatgttctctctggactgggtcaga
actaaagctcagattatgggaccggctcatctcatcaatgactatgtggagtacggcgcc
atactggacaaagagaacagcgaggtgcggggccacttccaggagttcctgtctctgaac
ggccaccagttggagcagcgtccgttccctgacgtagtgcagctggccctgtcccagcca
gactcctctgaggtgtaccgccaggccctgctgcaggcgcaggagagggccaccagaggg
ggactctaccttgactggatgaacaaaagtagtctgaagagcctgtctcgtctggtggtc
cagccccaccagggatccatctacgctgcctgcttctcccacgacggcaccaagatcgcc
tcctgtggctccagcaagacactgcgagtgtttaagagcacctctggggagaagctgctg
gagatccaggcccacgacgatgaggtgctctgctgcgccttctcccctgatgaccgtctc
ctagcaacctgctccagtgataggaaggtcaaggtttggaacgtggagcgtgggactctg
atgaggatgtttgaggaggaacacgaggagcaggtcaaccactgtcagttcaccaacaca
cgccgacgcctcctactggccacctgttccaacgacaagttcatgaacaccaagctgtgg
aacatcaataaaccctcctcccagaacaccatgtttggtcatttggagcctgtcaatcac
tgctgtttctcccctgatgacacctacctctccacctcttccagcgacggaaccctgaag
ctgtgggaggtgtcctcggccaatgagtggaagtccatagacgtggcggacatgttcccg
gagcagagagagcagactgcggtcatggtgaagtgcagcacctggtcagcagacggcagg
accatcatctgtgctgccaggaacgcggtctttgtgtttgatgtagagacggcggccatg
ttgttggagatccggaccagtcgcctgagcacggtgcagtactgtcactcctgtcccagc
agcaacctggtggccatcgcactgtcacactatgctgtggagctgtgggacatagagacc
agtaagaagatggctgactgtagtggtcatctgagctgggtccatggagtccagttctcc
cctgacggatctctactgctctcctgttctgacgaccagaccgtcagggtgtgggagacc
aatagagtccacacctcctcggctgtctgtctgaagagggactctgacgtgctctttaac
aacggtgacattaccgtggtcgccgccgacaaccgcaacagactgcaggtgaggaatggg
aggaccggagcggtggtgttccagtcagaagaccagacgtctcgtatccgctgcactgct
atctgctcacagacctcagccgtggggctgggacgagaggatgggacgatacaggtgttg
gaggtgccatcggggacctctctagccactcttcagggtcacaccaggacagttctccac
tgccagttcaccccggagggacacacactcatcacctcctctgaggacaccaccatacgg
gtgtggaggtggaggacaggtgagtgtgtggttctggagggccacaaggagcaggtcaga
tgcttctctctgctcaccacctcaccctcagagacacatctcctcagctggtccttcgac
ggcaccatcaaggtgtgggacatgtctagtggtgaacggctgcaggacctagtgtgtcac
cagggggcggtgctagcctgtgacgtgtcgcctgacggacagctctttgccaccacctcc
gctgacaagactgctaaggtgtggaccagtgcatcgtgggagtgcgtgcgcctgttgaat
ggccaccaggactgtgtccgcagctgcaaattctcttgggacggccgtcgcctagcaacc
ggcgacgacaacggagagatacggctgtggaacatgaaggatggtactctgctaaagatc
tgttccagtgacaacaaagacgccatggactctctgcacggaggctgggtgaccgacctg
cacttctccccagacaacactgtgctgctgtctacaggaggatacattaagtggtggaac
gtggagaaaggggaggccctccagaccttctacccgacaggagccaatctgaaaaggatc
catgtgtcacctgacttctccaccttcgtcaccatagacaatatcggaatcctctacatc
ctgaagaaggtggaatga
DBGET
integrated database retrieval system
