Salmo salar (Atlantic salmon): 106577609
Help
Entry
106577609 CDS
T04363
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106577609
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106577609
03009 Ribosome biogenesis [BR:
sasa03009
]
106577609
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106577609
Spliceosome [BR:
sasa03041
]
Complex A
U2 snRNP components
U2 related factors
106577609
Complex B
106577609
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
106577609
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
90S particles
Helicases
106577609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
AAA_25
nSTAND3
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
106577609
NCBI-ProteinID:
XP_014011291
UniProt:
A0A1S3N893
LinkDB
All DBs
Position
ssa18:49909711..49948766
Genome browser
AA seq
728 aa
AA seq
DB search
MMRRDRDRDERSKDRDRDRNVKPSGMALNLAVGSAGLSHKQTAMQQQINPFTNLPHTPRY
YEILKKRLQLPVWEYKERFNDILGRHQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKA
VACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTFLKYMTDGMLLREAMN
DPLLERYGVVILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSC
PLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDCLLFLTGQEEIDEACK
RIKRDIDDLGHDAGDIKIIPLYSTLPPQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAETS
LTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTE
KAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYVA
ALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAR
KAADESKMRFAQIDGDHLTLLNVYHTFKQNHESTQWCYDNFVNYRSLMSADNVRQQLSRI
MDRFSLPRRSTEFTSRDYYINIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVL
DHKPEWVMYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYEMGNFPNCEAKRQLERIVAKL
STKEYSQY
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcgagacagggaccgcgacgagcggtcgaaggacagggacagagaccggaat
gtcaagccctctggcatggccctgaacctggctgttggcagcgcaggcctctcccacaag
cagacagccatgcagcagcagatcaacccgttcaccaacctgccccacacgccgcgttac
tacgagatcctgaagaagaggctgcagctgccagtgtgggagtacaaggagcgcttcaat
gacatcctgggacgccaccagagcttcgtgctcgtcggagagacgggctccggcaagacc
acgcagatcccccagtggtgtgtggacatggtgaaggggttgggtggacctaagaaggca
gtggcctgtacccagcccaggagggtggcagccatgagcgtggcccagagggtggccgac
gagatggacgtcatgctgggccaggaggtcggttactccattcgattcgaggactgcagc
tcggccaagaccttcctcaagtacatgacagacggtatgttgctgcgggaggccatgaac
gaccctctgctggagcgctacggcgtcgtcatcctggacgaggcccacgagagaacgctc
gccacagacatcctcatgggcgtcctcaaagaggtggtccgacagaggtcagacctcaag
gtcatcgtcatgagcgccacgctggatgccggcaagttccaggtgtactttgacagctgt
ccgctgctgaccatcccgggtcgcacgcacccggtagagatcttctacacgccggaaccc
gagagggactacctggaggcggccatccgcaccgttatccagatacacatgtgtgaagag
gaggagggagactgtctgctcttcctcactggacaagaggaaatcgacgaggcctgcaag
cgcatcaagagggacatcgacgacctgggacacgacgcgggggacatcaaaatcatcccg
ttgtactcgacgctgccgccccagcagcagcagaggatctttgaaccgccaccaccccgc
aagcccaacggagccatcgggaggaaggtcgtggtttcgacaaacatcgccgagacatcc
ctgaccatcgacggcgtggtgtttgtaattgatcccggatttgccaagcaaaaggtgtat
aaccctcgtatcagagtggagtccctcctggtgacggccatcagcaaagcctcggcccag
cagagggcggggcgcgccgggaggacacgcccagggaagtgcttccgcctctacacagag
aaggcctacaagaccgagatgcaggacaacacgtatccagagattttgaggtccaacctg
ggttcggtcgtgctgcagctcaagaagctaggtatcgacgacttggtacattttgacttc
atggacccaccagcaccggaaaccctgatgcgggccctagagctgctcaactacgtggcg
gcgctcaacgatgacggcgacttgacggagctaggctccatgatggccgagttcccccta
gacccgcagctagccaagatggtgatcgcttcctgcgagttcaactgctccaatgagatc
ctgtccatcacagccatgctgtcagtcccacagtgcttcgtacgacccacggaggctagg
aaggcggccgacgagtccaagatgcgtttcgcccagattgatggagaccacctgaccctc
ctcaatgtctaccacaccttcaaacagaaccatgagtcgacacagtggtgctacgacaac
tttgtgaactacaggtcgctgatgtcggccgacaacgtgcgccagcagctgtcccggatc
atggaccgcttcagcctgccccgccgcagcacagagttcaccagcagagactactacatc
aacattcgcagagcactggtcacaggattcttcatgcaggtagcccatttggagcgtaca
ggccactacctgactgtgaaggacaaccaggtggtccagctgcacccctccactgtgctg
gaccacaagccggagtgggtgatgtacaatgagtttgtgctgaccaccaagaactacatc
cgcacctgcaccgacatcaaaccagagtggctggtgaaaatcgccccgcagtactatgag
atgggtaacttccccaactgtgaagccaagagacagttggagcgcatcgttgctaaactc
tcaaccaaggaatactctcagtactaa
DBGET
integrated database retrieval system
