Syntrophus aciditrophicus: SYN_02759
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Entry
SYN_02759 CDS
T00346
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sat
Syntrophus aciditrophicus
Pathway
sat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SYN_02759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sat03400
]
SYN_02759
Enzymes [BR:
sat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SYN_02759
DNA repair and recombination proteins [BR:
sat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SYN_02759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
UB2H
Fumerase
DUF6866_C
Motif
Other DBs
NCBI-ProteinID:
ABC76774
UniProt:
Q2LRR3
LinkDB
All DBs
Position
complement(926923..930531)
Genome browser
AA seq
1202 aa
AA seq
DB search
MRKIISLQRGPAAPVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSP
TEKEARETFQDLSLFLGSGKVLLYPPWDIQTTDMFALQRDVELVRMEVLARLLTDEPAVI
VASLKALMQKVVPRSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEFSLRG
HVLDIFPPLEDSPLRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVILSEERRQR
ALQNIRYRAAALELPRNVRDRLSETIDAGLSTSFNPLFLPLFYESLAPTSPDSPTENATA
TQAVRLGTFFDYLPGNCFVVLDDALAIENAGERIENEIDRCLLKAEREGKFYLEREASYV
TKDAFIKDLRRFQRMILEGLALGRLTEYASGNGEKTQASQYESLPLPLATDPELGDLHRG
PGGEETLLAPLVEHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYELPVRTPEGSLISEA
FLHSGPGVLSLREGRLSRSFLFPDLKLAAISEEELFGKKITGRRIRSAREGYFLRSFGDL
KEGDYVVHKEHGIGLYQGLQKLSVGGIENDFLLINYQSGDKLYLPIDRLDQISRYIGPEG
YVPKVDKLGGTSWDTVRERVKKSIQEVAEELVAIYAAREVMERRSFAPPDAVYEEFSAAF
PYDETPDQARAIEDIHADMNSAKPMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVP
TTILAEQHCQTFSSRMKDYPIRIEALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKD
VTFKNLGLVIVDEEQRFGVAHKEKLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIIN
TPPEDRQTIKTYVLEFNEETIREAIRRELARNGQVFFLHDRVRSIYTMARLVEKLVPEAD
IGVVHGQMKPREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQLY
QIRGRVGRSSEEAYAYLLVPKGVLLSRDAQKRLQVIMDFSEPGSGFRIASSDMEIRGGGN
LLGTSQSGHVSAVGYELYTELMEQTIREIKGETIPEEEIVPEINLGLPAFIPEEYMADVH
RRLVTYKRISMADSNEELEEIRDELADCFGYLPPEVTNLLEVIRLRNRLKAIRVKKMGYD
TKQMFLFFSADTPVEPERILSLARKKLKGLRLTPDCKIYIPMPGLKGSEILEKAGEVLRL
LS
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaaaatcatatccctccaacgaggaccggccgctccggtcctccgcatgcttcgc
gaaagaatagaaggcggcgttgagcggttgtccgtgaacaggcttcacggatcggccaat
gcctttctgatcgcggcgctgtcggaacaactcggcaggccccttgtcgtcctgagcccg
acggagaaagaggcaagggaaacttttcaggatctttccctctttctcggtagcggcaag
gttctcctctatcccccctgggatatccagacaacggacatgttcgccctccagcgggac
gtcgagctggtcaggatggaggttctggcccgcctgctgacagacgaaccggctgtaatc
gtcgcctccctcaaggccctcatgcagaaggttgtcccgcgaagcatccttgacgcctac
ctggagattctcgctccgggcagcgaggttccccgggatgaactcgttgccaagctggtt
gccggcggttatcagcggatgaccctggtggaggacaaaggggagttcagtctgcggggg
catgtcctggacatctttcctcctttggaggattccccgctccgcctggagttcgacggc
gacgatctggaatccctgcgcgccttcgaccccgcatcccagcgttccaccggcaggcgg
gaggcctttgtcctgtcccccgcgcgggaggtcatcctctctgaagaacgccgtcagagg
gcgctgcagaacatccgttaccgggctgccgccctggaacttccccggaatgtgcgcgac
cggctgtccgaaacgatcgatgccggtctgtccacctccttcaatcccctcttcctgcct
cttttctatgagtccctggccccgacttcgccggattccccaacggagaatgcaacggcc
acacaagcggtccggctgggaacctttttcgattaccttcccggaaactgttttgtcgtg
ctcgatgacgccctggccatcgaaaacgcaggggaaagaatcgaaaacgagattgaccgc
tgtctgctgaaggcggaacgggaaggcaagttctatctggaacgggaagcctcctacgta
acaaaggatgcttttataaaggatctgcgccggtttcaacggatgatactggaaggcctc
gctctcggccgcctgacggaatatgcttccggaaatggggaaaaaacacaagcctcccag
tatgaatcccttccccttcccctggcaacggacccggaactgggcgatcttcaccgcgga
cccggcggcgaggaaaccctgcttgcccctctggtcgagcacatccgccgctggctgcag
gaaggcatgctggtggcgttcctctgttccggcaaggaagacctgcaacggatgcgtcat
ctcctgggaaactatgagctgcccgtccggacgccggaaggatccctgatcagcgaagcc
tttcttcactcgggacccggcgtgctgagcctgcgggaaggccggctgagccggagtttt
ctcttccccgatctgaaactggctgcgatcagcgaggaggagcttttcgggaaaaagata
acgggaaggcgtatccggtccgcccgggaaggatacttcctgcgctctttcggcgatctg
aaagagggggactacgtcgtccacaaggaacacggaatcggcctctatcaggggctgcag
aaactgagtgtcggcggcatcgagaacgatttccttctcatcaattatcagagcggcgac
aagctctaccttcccatagaccgcctcgatcagatttcccgctacatcggtcccgagggc
tatgtccccaaggtcgacaagctgggcgggacgtcctgggacaccgtgcgggagcgggtc
aaaaaatccatccaggaagtcgccgaggaactggtcgccatttacgccgcccgggaggtc
atggaacggcgatccttcgcgccgcctgatgcggtttatgaagaattcagcgccgctttt
ccctacgatgaaacgcccgatcaggcccgggccatcgaagatatccatgccgacatgaac
agcgcaaagcccatggaccggctgatatgcggcgacgcgggcttcggcaagacagaagtg
gccatgcggtcggccttccgcacggccatggacggccgccagaccgccgttctcgttccc
acgaccatcctggcggaacagcactgccagaccttcagcagccgcatgaaggactatccc
atccgcatcgaggctctgaaccgcttcaagagcaaggcggagcagtcgtcggtgctggaa
ggactccgcaagggccaggttgatatcgtgatcggcacgcaccggctgcttcagaaagat
gtgacctttaaaaatctggggctggtgatcgttgacgaggaacagcgtttcggggtcgcc
cacaaggaaaagctgaagaaactcaggaccctcgtcgatgtcctcaccctgacggccacg
ccgatcccccggacccttcatctttccctggttggaatccgcgatctgtccatcatcaat
accccacccgaggaccggcagaccatcaagacctatgtcctggaattcaacgaggaaacg
attcgggaagccatccggcgggaactggcccgcaacggtcaggttttctttctccacgac
cgggtcaggtcgatttacacgatggcccgcctggtggaaaagctggttccggaagcggac
atcggcgtcgttcacgggcagatgaagcctcgggaaatcgaggacgtcatgggccgattt
ctacgcaaggagtgcaatgtcctggtctgcacgaccatcatcggttccgggctggatatt
cccacggcgaatacgatcctcgtcaatcgggcggaccgcttcggcctggcccagctctat
cagatccggggacgggtgggacgatccagcgaggaagcttacgcctacctcctcgttccc
aaaggggttctcctttcccgggacgcccagaaacggctgcaggtcatcatggatttttcg
gaacccggttccggattccggatcgcctccagcgatatggaaatccggggaggcggcaat
ctgctggggacctcgcagtccggccatgtgtccgccgttggttatgaactgtacacggag
ctgatggagcagacgattcgggaaatcaagggagaaaccatacctgaggaggaaatcgtg
ccggaaatcaatctgggactccccgcctttatccccgaagaatacatggcagacgtgcac
cggcggctggtcacgtacaagcggatctccatggccgattcaaatgaggaactggaagaa
atccgcgacgagctggcagactgcttcggctacctgccgccggaagtgaccaacctcctc
gaggtcatccggctccgcaaccgcctgaaggcgatccgggtaaaaaagatgggctacgac
acgaagcagatgtttctcttcttcagcgccgacactcccgtggagccggaacggattctt
tctctggcccgcaaaaagctcaagggactgcgtctgacaccggactgcaaaatttacatc
cccatgcccggcctcaagggaagcgagattctcgaaaaggcaggcgaggtgctgcggctg
ctttcctga
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