Staphylococcus aureus USA300-ISMMS1 (MRSA): AZ30_02465
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Entry
AZ30_02465 CDS
T03115
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
saui
Staphylococcus aureus USA300-ISMMS1 (MRSA)
Pathway
saui03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AZ30_02465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saui03400
]
AZ30_02465
Enzymes [BR:
saui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AZ30_02465
DNA repair and recombination proteins [BR:
saui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AZ30_02465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
RecG_dom3_C
Glyco_hydro_115
UB2H
AAA_22
IstB_IS21
DUF3105
Motif
Other DBs
NCBI-ProteinID:
AHJ06294
LinkDB
All DBs
Position
538501..542010
Genome browser
AA seq
1169 aa
AA seq
DB search
MMTILTTLIKEDNHFQDLNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLY
QADKLETDLLQFIDAEELYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVP
LNGLKKWLTPVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGII
DIFPLIGEPIRIELFDTEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEE
LKTAYENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIEYFQK
DAIIAVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQSFIKYDDFETLIEGYPVTYF
SLFATTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLVETETKVERMQ
AMLSEMHIPSITKLHRSMSSGQAVIIEGSLSEGFELPDMGLVVITERELFKSKQKKQRKR
TKAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTDQLFV
PVDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGY
QYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRA
AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKT
GFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQS
IYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNAN
TLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGS
GFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEV
DLNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARLLDIV
EIKVHALHSGITLIKDKGKIIDIHLSVKATENIDGEVLFKATQPLGRTMKVGVQNNAMTI
TLTKQNQWLDSLKFLVKCIEESMRISDEA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ataatgacaatattgacaacgcttataaaagaagataatcattttcaagaccttaatcag
gtatttggacaagcaaacacactagtaactggtctttccccgtcagctaaagtgacgatg
attgctgaaaaatatgcacaaagtaatcaacagttattattaattaccaataatttatac
caagcagataaattagaaacagatttacttcaatttatagatgctgaagaattgtataag
tatcctgtgcaagatattatgaccgaagagttttcaacacaaagccctcaactgatgagt
gaacgtattagaactttaactgcgttagctcaaggtaagaaagggttatttatcgttcct
ttaaatggtttgaaaaagtggttaactcctgttgaaatgtggcaaaatcaccaaatgaca
ttgcgtgttggtgaggatatcgatgtggaccaatttcttaacaaattagttaatatgggg
tacaaacgggaatccgtggtatcgcatattggtgaattctcattgcgaggaggtattatc
gatatctttccgctaattggggaaccaatcagaattgagctatttgataccgaaattgat
tctattcgggattttgatgttgaaacgcagcgttccaaagataatgttgaagaagtcgat
atcacaactgcaagtgattatatcattactgaagaagtgatcagccatcttaaagaagag
ttaaaaactgcatatgaaaatacaagacccaaaatagataaatcagtgcgcaatgatttg
aaagaaacgtatgaaagctttaaattattcgaaagtacatactttgatcatcaaatacta
cgtcgcttagtagcgtttatgtatgaaacaccttcgacaattattgagtatttccaaaaa
gatgcaatcattgcagttgatgaatttaatcgtattaaagaaactgaagaaagtttaaca
gtagagtctgattcgtttattagcaatattattgaaagtggtaatggatttataggacaa
agttttataaaatatgatgattttgaaacattgattgaaggctatcctgtcacttatttt
tcattattcgctacaacaatgccgataaaactaaatcatattattaaattttcatgtaaa
cctgtccaacaattttatgggcaatatgacattatgcgttctgaatttcaacgatatgtt
aatcaaaactatcatatcgtggttttggtcgaaaccgaaactaaagttgaacgtatgcaa
gcgatgttaagtgaaatgcatattccatcaataacaaaattgcatcgctcaatgtcatcg
gggcaagcagtgattattgaaggcagtttatctgaaggatttgaactacctgatatggga
ttagttgtcattactgagcgtgagctttttaaatcaaaacagaaaaagcaacgaaaacgt
acgaaagctatctcaaatgctgaaaaaattaagtcttaccaagatttaaatgtgggagat
tatattgttcatgtgcatcatggtgttggtagatatttaggtgttgagacgctcgaagtg
gggcaaacgcatcgtgattatattaaattgcaatataaaggtacggatcaactatttgtt
ccagtagatcaaatggatcaagttcaaaaatatgtagcttcggaagataagacgccaaaa
ttaaataaactcggtggcagtgaatggaaaaaaacaaaagctaaagttcaacaaagtgtt
gaagatattgctgaagagttgattgatttatataaagaaagagaaatggcagaaggttat
caatatggggaagacacagctgagcaaacaacatttgaattagattttccatatgaactt
acgcctgaccaagctaaatctatcgatgaaattaaagatgacatgcaaaaatcgcgtcca
atggatcgcttgctatgtggtgatgttggttatggtaaaactgaagttgcagtgagagca
gcattcaaagctgtaatggaaggaaagcaggttgcatttttagttcctacaactatttta
gctcagcaacattatgagacgttaattgagcgtatgcaagattttcctgttgaaattcaa
ttaatgagtcgttttagaacgcctaaagagataaaacaaactaaggaaggacttaaaact
ggatttgttgacatagttgttggtacacacaaattacttagtaaagatatacagtataaa
gatttagggctgttgattgtagatgaagaacaacgatttggtgtacgccataaagagcgt
attaaaacattaaaacataatgtagatgtactaacattgactgcaaccccaatacctaga
acattgcatatgagtatgctaggtgtgcgggatttgtcagtgattgaaacgccgccagaa
aatcgtttcccagttcaaacatatgtattagaacagaacatgagttttatcaaagaagct
ttagaaagagaactatcccgtgatggccaagtgttttatctttataataaagtgcaatcc
atttatgaaaaacgagaacaactccagatgttaatgccagatgctaacattgcagttgct
catggacaaatgacagagcgcgatttagaagaaacgatgttaagttttatcaataatgaa
tatgatattttagtaacgacgacgattattgaaacaggtgtcgatgtcccaaatgcaaat
actttgatcattgaagatgcagatcgctttggattgagtcagttgtatcaattaagaggt
cgtgttggtcgttcaagtcgtattggttatgcatacttcttacatccagcaaataaggta
ctaactgagactgcagaagatcgattacaagcgattaaagaatttacggagttaggctca
ggatttaagattgcgatgcgtgatttgaacattcgtggtgctggtaatttgttaggtaaa
caacagcacggctttattgatacagttggatttgatttgtacagtcaaatgttagaagaa
gctgtaaatgaaaaacgtggtattaaggaaccagaatctgaggtgccagaagtcgaagtt
gatttaaacttggatgcatatttgccaacagaatatattgcaaatgaacaagctaaaatt
gaaatttataaaaagctacgaaaaactgaaacatttgatcaaattatcgacattaaagat
gaattaattgatcgtttcaatgattatcctgttgaagtagcacgtttgcttgatatagtg
gaaataaaagtacacgcattacattcaggtatcacgttgattaaagataaagggaaaata
attgatattcatttatctgtaaaagccactgaaaatattgatggcgaagtgctgttcaaa
gcaacacaacctttaggtagaacaatgaaggttggtgttcaaaataatgcaatgacaatt
actttaacgaaacaaaatcaatggcttgatagtttgaagtttttagttaagtgcattgaa
gaaagtatgagaatcagtgatgaagcataa
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