Shewanella amazonensis: Sama_0778
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Entry
Sama_0778 CDS
T00445
Name
(GenBank) tRNA nucleotidyltransferase (CCA-adding enzyme)
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
saz
Shewanella amazonensis
Pathway
saz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sama_0778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_0778
Enzymes [BR:
saz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Sama_0778
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sama_0778
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ABL98985
UniProt:
A1S3M9
LinkDB
All DBs
Position
complement(960154..961428)
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AA seq
424 aa
AA seq
DB search
MLYRLNKAGYEAFLVGGGVRDLLLGLEPKDFDVVTNATPEDIKKLFRNCRLVGRRFRLAH
IVFGRDVIEVATFRGHHGNEDGDKISKANAEGRLLRDNVYGSIDEDAERRDFTVNALYYD
ISDYSIRSYGGGMEDLNDGVLRLIGDPETRYREDPVRMIRAVRFATKLGMRIEEVTAAPI
RKLAPLLRDIPAARMYEEVLKLFFAGKGQANYQMMQEYQLFAPIFPLLADTIADSPKGHC
ARMVNLVMRNTDIRVMEDKPVTPAFFYAALLWYPLKSRAEEIANESGLSLYDAYFAAMGD
VLEQQCQTISLPKRFSVPARDIWQMQLRFERSQGTRAFKLMESPKFRAGYDLLLMRAEIE
GGNLQKTASWWQSFVEAPEEERGNIARGGAKSDAPRNRKRRVRRRPRSEGGSGEGAKANT
GSDS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
gtgctttatcgcctgaacaaggccggttacgaggcctttttggtgggtggcggtgtacgc
gatctgctgctgggcctggagccgaaagactttgacgtggtgaccaacgccacccccgaa
gacatcaaaaagttgttccgcaactgccgcctggtgggtcgccgtttccgtttggcccac
atcgtatttggccgtgacgtgattgaagtagcgaccttccgtggtcatcacggcaatgag
gatggcgacaagatttccaaggccaacgccgagggacgcctgctgcgggacaacgtgtac
ggcagcatcgatgaagacgccgaacgccgcgactttaccgtaaacgccctctactacgac
atcagcgattactctatccgcagctacggcggcggtatggaagatctcaacgacggtgta
ttgcgcctgattggcgatcctgagacccgctaccgcgaagacccggtgcggatgatccgc
gccgtgcgctttgccaccaagctgggcatgcgcatcgaagaggtaacagccgcgccaatc
cgcaaactggcaccgctgctgcgcgatattccggccgcccgcatgtacgaagaagtgctc
aagctgttttttgcgggcaagggtcaggcaaactatcagatgatgcaggaatatcagcta
tttgcgccgattttcccgctgctggccgacaccattgccgactcaccaaagggccactgt
gcccgtatggtgaacctggtgatgcgcaataccgatatccgggtcatggaagacaagcca
gtcacaccggccttcttctatgcggccctgctgtggtatccgctgaaaagccgcgccgaa
gaaattgccaacgagagtggcctcagtctgtacgatgcctattttgccgccatgggcgat
gtgctcgagcagcaatgccagaccatttcgctgcccaagcgcttcagtgttccggctcgg
gatatctggcagatgcagctcagatttgagcgcagccagggtacccgcgcctttaaactg
atggaaagccccaagttccgcgccggttatgatttgctgttgatgcgcgccgaaatagag
ggtggcaatctgcaaaagaccgccagctggtggcagtcgtttgtagaagcgccggaagaa
gaacgtggcaatatcgcccgcggcggtgccaagagtgatgctccccgcaaccgcaaacgc
cgcgttcgccgtcgcccccgcagtgaaggtggcagtggcgaaggagccaaggcaaacacc
ggcagcgacagctga
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