Shewanella amazonensis: Sama_1608
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Entry
Sama_1608 CDS
T00445
Name
(GenBank) Excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
saz
Shewanella amazonensis
Pathway
saz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sama_1608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saz03400
]
Sama_1608
DNA repair and recombination proteins [BR:
saz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sama_1608
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GFIT
Motif
Pfam:
UvrC_RNaseH_dom
HHH
HHH_5
GIY-YIG
UVR
HHH_2
HHH_3
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABL99815
UniProt:
A1S609
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Position
1965437..1967257
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AA seq
606 aa
AA seq
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MFDHKAFLKTVSSASGVYRMYDAAAEVIYVGKAKDLKKRLSSYFRTNLPNIKTQALVSNI
ANIDVTLTHSETEALILENDYIKQYMPKYNVLLRDDKSYPYILLSGHKHPRLAYHRGAQR
EKGEYFGPYPNGGAVRESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCVGKIS
DEDYDEQVRLATLFLRGKDQQVIASLVGKMEAAALAMEYEAAARYRDQIQALRKVAEQQN
VSGQQGDMDVIGVNYASGIACFHILFIREGKIFGSRSYFPAVPDATELGEVLRAFMLQFY
LGNEAHRSIPKEVLLGEEFEDLHELEAAMQDSLGHRLEIKTKVRADRAAFLRLANTNAAN
AVVTKLAHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPNKG
EYRRYNISGITGGDDYAAMAQALSRRFDKIERTGKVPDVLFIDGGLGQLRAAMTIVNDKF
AELDRQPLLVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHIRDESHRFAITG
HRAKRQQTRNTSTLESIPGIGPKRRKALLQYLGGLQQVKNASVAELAKVPGISAEMAQTI
HDALRG
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgaccataaagcctttttaaaaacggtttccagtgccagtggcgtctaccgcatg
tatgacgctgcggctgaggttatctatgtaggaaaggcaaaagatctgaaaaagcggctg
tcgtcctatttccggacgaatctgcccaatatcaagacccaggctttggtttccaacatc
gccaacatcgatgtcacccttacccacagtgagaccgaagcattaatcctggaaaatgat
tacatcaagcagtacatgcccaaatacaatgtgctgctcagagatgataaatcctacccc
tatattttgctcagtggccataaacatcccagactggcctaccacagaggcgcccagcgg
gagaaaggggagtactttgggccgtaccccaatggcggcgccgtgcgtgaaagcctcaat
ctgatgcaaaagctgtttcccatccgccagtgtgaagatgcctactaccgcgcccgctca
cgtccctgtctgcagtatcaaattggccgctgttcggcgccctgcgtcggcaaaatttcc
gatgaggactacgacgagcaggtaaggctggcaaccctgttcctcagaggaaaggaccaa
caggttatcgccagtttggtcggcaaaatggaagccgcagcactggcgatggaatacgag
gctgcagcgcgctatcgtgaccaaattcaggcgctgcgcaaggttgctgagcagcaaaat
gtctcaggacagcagggggatatggatgttatcggggtgaattacgcctcaggtattgcc
tgttttcatatcctgtttatccgcgaaggcaagatttttggcagtcgcagttatttccct
gcggtgcctgatgccactgagcttggcgaagtgttacgtgcctttatgctgcaattctat
ttgggaaatgaggcgcaccgcagcattcccaaggaagtcttacttggcgaagagttcgaa
gatctccatgagcttgaagccgccatgcaggattcactcggtcacaggcttgaaatcaaa
accaaggtgagggcagatagggccgcgtttttacgcctggccaataccaatgccgccaat
gccgttgtgaccaagctggcacataaaagcacggttgagcagcgtatggaactcctggag
gaagtgctgggccttggcgcacccatacaacgcatggagtgttttgatatcagtcacacc
atgggggaaagcaccgttgcctcctgcgtggtctttaaccgtgaaggccccaataagggg
gagtatcgtcgctacaatataagcggcattacagggggggacgactacgcggccatggct
caggcgctttcccgtcggtttgataagattgaacgcaccggcaaggtgcccgatgtgctt
tttatcgacggcggcctggggcagctgcgagctgccatgacgatagtcaacgacaagttt
gccgaacttgaccggcaaccgctgcttgttggggttgcaaaaggggagagcagaaagcct
gggcttgaaaccctcatctttggtggcagtgaggccgagttttcgttggagtccgataat
cccgcgctgcacctcatccagcatattcgcgatgagtcccaccgctttgccattaccggc
cacagggcgaaaaggcagcaaacccgaaatacctcgactctggagtcaattcccggaatt
ggtcccaaacgacgcaaggcacttctgcaatatctcggcggattacagcaagttaaaaat
gccagtgtcgccgagcttgcgaaggtgcccgggatcagcgcagaaatggcgcaaactatc
cacgacgcattgcgggggtga
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