Shewanella amazonensis: Sama_3067
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Entry
Sama_3067 CDS
T00445
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
saz
Shewanella amazonensis
Pathway
saz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sama_3067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_3067
03016 Transfer RNA biogenesis [BR:
saz03016
]
Sama_3067
Enzymes [BR:
saz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sama_3067
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sama_3067
Transfer RNA biogenesis [BR:
saz03016
]
Prokaryotic type
tRNA degradation factors
Sama_3067
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ABM01270
UniProt:
A1SA63
LinkDB
All DBs
Position
complement(3644081..3646507)
Genome browser
AA seq
808 aa
AA seq
DB search
MINDPHFEREQEKYDNPIPSREFILEYLRSQTSPQPRDSIAEALKIHDEERLEALRRRLR
AMERDGELVFTRGQCYGLPERMDLMSGTVLGHKDGFGFFRPDNGGDDLFINERDMQLYFH
GDKVLAQKAGVDRRGRRDARIVRLLSERSAALVGRFYVDAGMAFVVADDKRIPHEILIAN
EDKNGARHGDVVVIELTRRPGRYVRAGGKVTEVLGKQMAPGMEIEIALRNYDLPHQWSAV
IEKKLRRIPDYVTDEDKEGRVDLRELPLVTIDGEDARDFDDAVYAERKRGGGWRLWVAIA
DVSHYVRTDSALDKEARARGNSVYFPSQVIPMLPEKLSNGLCSLNPGVDRLCMVAEMTIS
AKGGLSGYKFYPAVMHSHARFTYTQVAAMLEGGEVKDEHKALFPHLKVLQELYLCLDEQR
AERGAIAFETLETQFIFNEQRKIDRIVPRARNQAHKIIEECMILANVAAAKFVIKHKGHV
LYRVHEKPSEQKLTQFKDFLAERGLSMTGGLEPEPADYLALMAQLAGRPDAELIQVMLLR
SMRQAVYTPDNEGHFGLALEAYSHFTSPIRRYPDLVLHRVIRYLLAKERGEASEKWTADG
GYHYQLEELDLLGEECSNTERRADEATRDVSDWLKCEFMQDHVGDSFSGVIASVTSFGLF
VRLDELFIDGLVHISSLGSDYFQYDPQRQRLIGENSGQIYQIGDPVAVKVASVNLDDRQI
DLQMEGERPGRKKAGKKPTTARDRANLEGARTGNGKPGKGGSVRSQLAGGKLGGSETKKR
DAKAKDGKKPKKAAEAKPKAAKRVKRKK
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgattaacgatccgcattttgagcgtgaacaggaaaaatacgacaaccccatccccagc
cgggaatttatcctcgaatatttgaggtctcaaacttctcctcagcctcgcgacagtatt
gccgaggccctgaaaatccatgatgaagagcgcttggaagccctgcgccgccgactgcgc
gccatggagcgtgatggcgagctggtgtttacccgtggccaatgttacggcctgcccgaa
cgcatggacttgatgagtggtactgtccttggccacaaagatggctttggctttttccgc
cccgataacggtggcgacgatctttttatcaacgagcgcgatatgcagctctacttccat
ggcgataaggtgctggcgcaaaaagccggcgttgaccgccgtggtcgtcgcgatgcgcgc
attgtgaggctcttgtcagagcgcagcgctgccctggtgggccgcttctatgttgatgcc
ggtatggcctttgtggtcgcggatgacaagcgtattccccacgaaatcctcattgccaac
gaagataaaaatggcgcccgccacggcgatgtggtggtgatcgagctgacccgccgcccg
ggacgttacgtgcgtgccggtggcaaggtgactgaggtgctgggcaaacagatggcacct
gggatggagatcgagattgccctgcgcaattacgacctgccacaccagtggtcagcggtg
attgaaaagaagctgcgccgcatcccggattatgtcaccgatgaagacaaggaaggcagg
gtcgatctgcgagagctgccactggttaccatagacggtgaagatgcccgcgactttgac
gatgctgtctatgccgagcgtaagcgtggtggcggctggcgcctgtgggttgccattgcc
gacgtgagccattatgtgcgcaccgattcagcactggataaagaagcccgcgcccggggg
aactccgtgtacttcccgtcgcaggtgatccccatgctgccggaaaagctctccaacggt
ctgtgctcattgaacccgggtgttgaccgcctctgtatggtggcagagatgacaatctcc
gccaagggtggtctgtcgggttacaagttctacccagcggtgatgcactcccatgcccgc
ttcacctatacccaggtggcggccatgctggaaggtggcgaggtgaaagacgagcacaag
gccttgttcccgcaccttaaggtgcttcaagagttgtatctgtgtctggatgagcagcgt
gctgagcgcggcgctattgcctttgagacactggaaacccagtttattttcaatgagcag
cgcaagattgaccgcattgtgccccgtgcccgtaatcaggcccacaagatcattgaagag
tgcatgattttggccaacgtggccgccgccaagtttgtgattaaacataagggccatgtg
ctttatcgggtgcacgagaagccgtcagagcaaaagctgacccagtttaaagacttcctt
gccgagcgcggtttgtccatgaccggcggcctcgagcccgagcctgccgactatttggct
ctgatggctcagttggccggcagacctgatgccgagcttattcaggtgatgctgctgcgc
tcgatgcgtcaggccgtttacaccccggataacgaaggtcactttggcctggcgctggaa
gcttacagccactttacctcgcccattcgccgctaccccgacttggtgctgcacagggtt
atccgttatctgctcgccaaagagcggggtgaagccagtgagaagtggaccgccgatggt
ggctaccactatcagctggaagagttggacctcctcggtgaagagtgctccaataccgag
cgccgtgccgatgaagcgacccgggatgtgtccgactggcttaagtgtgagtttatgcag
gaccacgtgggtgacagcttcagtggtgtgattgcctctgtgaccagttttggtctgttt
gtgcgtctggatgagctctttatcgatggtctggtgcacatctccagtttgggtagcgat
tacttccagtacgaccctcagcgtcagcgtctgatcggtgaaaactctggtcagatctac
cagattggcgatccggtggccgtgaaagttgcctcggttaatctggacgacagacagatt
gatttgcagatggaaggtgagcgcccgggccgcaaaaaggctggcaagaagccaacgacc
gcccgtgacagagccaatcttgaaggtgcccgcactggtaacggcaagcccggtaaaggc
ggtagcgtgcgcagccagttggccggcggcaaattggggggctctgagaccaaaaaaaga
gacgccaaggccaaagacggtaagaaacccaaaaaggcggcagaagccaagcccaaggcc
gctaaacgagttaagagaaagaaataa
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