Sulfurospirillum barnesii: Sulba_0922
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Entry
Sulba_0922 CDS
T02139
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sba
Sulfurospirillum barnesii
Pathway
sba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sulba_0922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sba03019
]
Sulba_0922
03016 Transfer RNA biogenesis [BR:
sba03016
]
Sulba_0922
Enzymes [BR:
sba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sulba_0922
Messenger RNA biogenesis [BR:
sba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sulba_0922
Transfer RNA biogenesis [BR:
sba03016
]
Prokaryotic type
tRNA degradation factors
Sulba_0922
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AFL68223
UniProt:
I3XW99
LinkDB
All DBs
Position
complement(897306..899252)
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AA seq
648 aa
AA seq
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MKNFLLSLNEGIAKEDVPSVFLPHFNALLALKAIVLKHALYVFEENYFAGKLDVSFSGTG
YLTPLLSTTSKDIVVEASGLHGGMRGDVVVAKRIPNKKSRRAKAIVVYIASRAFAKSIVY
TKMSKGKVVGLNIKNESIFDITASQKSLKQLPLGTVLKIDNLSNTIEEVLGTLDDARIDE
KISLALFDKKEFFSNEAEIEAKSHGDYVDKSYYPQRVDLSHLPFCTIDPVDAKDFDDAIY
FDVENHILYVAIADVSEYVYPMGHIDKEAVERGFSIYFPHKSIPMLPRALSENICSLKPN
VDRLAYTFKITLDPLTCKPLKEELFESIIHSAKRYTYETIDLFLKGNIEEADAADHTILA
YLLPLHALTQKLRDIRLENAFSFRSSEVRMRVDEAQNLLATTIEEETPSHGLIEDCMLLA
NKAAAKKLGFGIFRTHESPSFERMEALLNDLALIGIHVKLRVDLPKMIQEIQQKADALNL
REEVDKLIIKSQKKAIYEPENKGHFGLGFDMYTHFTSPIRRYSDLTLHRLLKAKMANDEK
KLAFLLKDIDPLCEKISLLERESDKVAWDYMDRKFARYMALHVGDNFKAIVVETEQNPIA
KLDDTLKGARIFLLDSDVHLLQRIEVKIVESNIATARIYARVSRSLDV
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaatttccttttaagccttaatgaggggatagcaaaagaagatgtcccttccgtt
tttttaccccattttaatgccctcttagccctaaaagccatcgttttaaaacatgctctt
tacgtttttgaagagaactattttgcaggaaagctagatgtctcttttagtggtacgggg
tatcttacgcctcttctttcaactacaagtaaagatattgttgtggaagcttcaggactg
catggaggtatgcgaggtgatgtcgttgtagccaaacgcattcccaataaaaaaagccgt
cgtgccaaagctattgtggtctacattgcaagcagagcgtttgcgaagagtattgtgtat
accaaaatgagcaaagggaaagtggttgggttaaatatcaaaaatgaatccatttttgat
attacggctagccaaaaatcactcaaacaacttcccttaggcacggtgcttaaaattgac
aatcttagcaacaccattgaagaggttttaggcacactggatgatgcacgtatcgatgaa
aaaatctctctagccctctttgataaaaaagagttttttagcaatgaagccgaaatagaa
gcaaaaagtcatggggattatgttgacaaaagttactacccacagcgtgttgacttaagc
catcttcctttttgtaccattgatcctgtggatgccaaagattttgacgatgctatttat
tttgatgtggaaaaccacattttatatgttgctattgcggatgttagtgaatacgtttat
cccatggggcacattgataaagaagccgttgagagagggttttccatctattttccgcac
aaatccattccgatgctgcctcgtgccttaagtgaaaatatctgttcgttaaaacctaat
gttgaccgtcttgcgtatacctttaaaatcactctcgatccgcttacatgtaaacctcta
aaagaagagctttttgagagcattattcactcagccaaacgctacacgtatgaaaccatt
gatctctttttaaaaggcaatattgaagaagctgatgcagcggatcataccattttagcc
tacctcttacccttacatgcactcacacaaaagctaagagatattcgacttgaaaatgcc
ttttcatttcgctcctcagaagtcagaatgcgtgtggatgaagcgcaaaatctccttgca
accaccattgaagaggagactccctcgcacggacttattgaagattgtatgcttcttgcc
aataaagcagcggctaaaaaactcggctttggcatttttcgaacccatgaaagtccctca
tttgaacgcatggaagctcttttaaacgatttagcactgattggaattcatgtgaaacta
cgtgtggatcttcctaaaatgattcaagaaattcaacaaaaagcagatgcactgaatctt
cgagaagaggtcgataaactgattattaaaagtcaaaaaaaagccatttatgaacctgaa
aacaaagggcattttggtttgggttttgacatgtatactcattttacctctccaattcgt
cgttacagtgaccttactttgcaccgtcttttaaaagctaagatggcaaacgatgagaaa
aaactggcttttttactgaaagatattgatccactgtgcgaaaaaataagcctattggaa
cgtgaaagcgacaaggttgcgtgggattatatggatcgtaaatttgcccgttatatggcg
ttacatgtaggcgataatttcaaagccattgtggtggaaacggagcaaaatcctattgca
aagcttgatgatacactaaaaggtgctcgtatctttttactggatagcgatgtgcattta
cttcaacgcattgaagtaaaaatcgttgaaagcaacattgcaacagcacgtatttatgca
cgtgttagcaggagtttagatgtataa
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