Shewanella baltica BA175: Sbal175_0792
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Entry
Sbal175_0792 CDS
T02014
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sbb
Shewanella baltica BA175
Pathway
sbb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal175_0792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbb03019
]
Sbal175_0792
03016 Transfer RNA biogenesis [BR:
sbb03016
]
Sbal175_0792
Enzymes [BR:
sbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Sbal175_0792
Messenger RNA biogenesis [BR:
sbb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sbal175_0792
Transfer RNA biogenesis [BR:
sbb03016
]
Prokaryotic type
tRNA degradation factors
Sbal175_0792
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AEG10073
UniProt:
G0AXW5
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All DBs
Position
941266..943689
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AA seq
807 aa
AA seq
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MIKDPHFEREQDKYENPIPSREYIIDYLRSQKSPITRDSIAAALNIQEEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLIPGTVLGHREGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGTDRRGRREARLVRLIQPRSAAIVGRYHVDSGMAFVIADDKRITQEILVAN
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSPV
IEKKLRRIPDEVTDADKVGRVDLRHLPLVTIDGEDARDFDDAVYAEKKAGGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTVS
AKGKLSGYKFYPAVMYSHARFTYTQVAEMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETMETQFIFNEQRKIDKIVPRGRNQAHKIIEECMILANVSAAKFVKKHKGDV
LYRVHEAPSEQKLANFKEFLAERGLTMPGGLEPTPSDYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKERGEATEKWTQDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTSFGLF
VRLNELFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLVMLGDDGKGGKRKASASRDKPMTARERVNREGAKQGKAGKTATPSTKAEAGKAKPKAK
AGTKAKKTAVKDPAKKPKAAKRSTRKK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagc
cgtgagtatattatcgattacttacgttctcagaaatcacctatcactcgtgacagtatt
gccgcggcgttaaacatccaagaggaagaacagcttgaggccctgcgccgtcgcctacgt
gcgatggaacgcgatggcgaactcgtgttcacccgtgggcagagctatggcttgcccgag
aaaatggatcttatccccggcactgtactcggacacagagaaggcttcggctttttcaaa
cccgatgaaggcggtgatgacttatttatttcgaaccgcgatatgctgatgtatttccat
ggtgataaagtgctcgcgcaaaaagcgggcacagatcgtcgtggtcgccgcgaagcgcgt
ttggtgcgtttgatccagccgcgcagtgccgcgattgttggccgttatcatgttgatagc
ggtatggcatttgtcattgccgatgataagcgtataacccaagaaatcttagtcgcgaat
gaagatcgcaacggcgcccgtcaaggcgatgtggttgtggttgaattaacgcgtcgcccg
ggtcgttttgttaaggctgcgggtaaagtgactgaagtgcttggtaagcaaatggcgccg
gggatggaaatcgaaatcgccttgcgtaactatgacttaccccatacttggtcacctgtg
atcgagaagaaactgcgccgaattcccgatgaagtgaccgacgccgataaagttggccgt
gtggatttacgtcatctgccattagtgactatcgacggcgaagacgcccgcgattttgac
gatgccgtgtatgcggagaaaaaagccggtggcggctggcgtttatgggttgcgattgct
gacgttagttattatgttcgcaccgattcggctttagataccgaagcgcgtgcccgtggt
aactcagtgtatttcccatcgcaagtgatccctatgctgccggagaaaatctccaacggc
ctatgttcgcttaatcctcacgtcgaccgtttatgtatggtcgccgagatgacagtgtct
gccaaaggcaagttgtcgggttataagttttatccggctgtgatgtattcccatgcccgt
ttcacttatacccaagtggctgagatgttagaaggcggcccgattgcgcctgagcatgaa
gccttgttcccgcatctgcagtgtttacagtcattgtatttagcgctagatgagcaaaga
gctgagcgtggtgcgattgcgtttgaaaccatggaaacgcagttcattttcaatgagcag
cgcaagattgataaaatcgtgccgcgtggccgtaatcaagcacataaaatcattgaagaa
tgcatgattttagccaacgtttctgcagctaaatttgtgaagaaacacaaaggcgacgtg
ctgtaccgagtgcatgaagcgccatctgagcaaaagttggcgaactttaaagagttcctt
gctgagcgtggtttgactatgcctggcggacttgagccaacgccgtctgattaccagaac
gtgatgctgcaaattgccgaccgtcccgatgctgaacttatccaagtgatgttgctgcgc
tctatgcgtcaggcaatttacaccccagataatgaaggtcacttcggtctagccttagaa
gaatatgcgcattttacctcgcccattcgccgttatccggatttagtcttacatcgtgtg
atccgttatttactggcgaaggaaagaggcgaagccacagaaaagtggacgcaggatggt
ggctaccactatcaactcgatgaactcgaccaattgggcgaagagtgttcgactacagag
cgtcgtgccgatgaagcgactcgtgatgttagcgattggctcaagtgcgagtttatgcaa
gatcacgtcggcgataccttcgaagctgtgattgcctcagtgaccagttttggtttattc
gtgcgcttaaatgagctgtttatcgatggcttagtgcatatttcaagcctaggcagtgat
tactaccagtttgatcctatgcgtcaacgtcttatcggtgagcacactggccaagtctat
caagtgggcgatcctgtgacggttaaggtcgctgctgttaacttagatgacagacagatt
gacttagtcatgctgggcgatgacggcaaaggtggtaagcgtaaagcatctgccagccgt
gataagccgatgactgcccgtgagcgtgttaatcgcgaaggtgctaagcaaggcaaagcg
ggtaaaaccgcaacccctagcactaaggctgaagctggcaaagccaaacctaaggctaaa
gcgggcactaaagcgaaaaagacagcagtaaaagatccggctaaaaagccaaaagccgct
aagcggagcacgagaaagaaataa
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