KEGG   Sphingobium baderi: ATN00_05035Help
Entry
ATN00_05035       CDS       T04194                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sbd  Sphingobium baderi
Pathway
sbd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sbd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ATN00_05035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbd03400]
    ATN00_05035
Enzymes [BR:sbd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ATN00_05035
DNA repair and recombination proteins [BR:sbd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ATN00_05035
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ALR19771
UniProt: A0A0S3EWK5
LinkDB All DBs
Position
1000456..1002960
Genome map
AA seq 834 aa AA seqDB search
MADRDALAPYNAKRDFARTREPKGVLAKKGGNSFVVQKHEATRLHWDFRLEVDGVLKSWA
VTKGPSLDPADRRLAVRTEDHPLSYGDFEGIIPKGEYGGGTVMLWDRGTWEPVEGKSAAD
IDKGHLHFILHGERMKGEWLLVKMKGRSGEKRENWLLRKIDDDQADTQTVLVDRALTSVL
TGRSMAQIAADKKGAQSLAGAKGKAFAQKMQAARDHNAKLKPKARKGAATLPRFVKPQLA
TLVDSVPAGNDWLHEIKFDGYRALIAVAGEKVTVFTRSGLDWTEKFGPLVRAMAALALPP
ALIDGEIVAFGPDGNPSFSALQAVLKRGHGAEREDAPLSFFAFDLLSLDGADLKPLSTIE
RKERLEALLHQAQPPIHVADHVIGAGETLYRSMCEAGQEGIISKRVDAPYRGERTRSWVK
VKCTRRQEFIIIGWTKSNAKGRGFRSLLLAQQEGRKLVYKGKVGTGFDAQGMAHLAEAME
SLEVEEPPADVPREDARGARWIAPKLVAEIAFSEFTGDGRVRHGSFLGLRADKKAKDVKP
EKSQTAPAPRSDVKISNRDRVIFPESGQTKGELADYYSRIAPLMLPFAANRPISLVRCPQ
GRAKKCFFQKHDSGAFGEHVRQVAIQEKDGGSEDYIYVEDADGLLACVQMGTIEFHGWES
RADAVEKPDRMIFDLDPDEGLDFGAVKRAARDIHDRLSDIGLVSFAMLSGGKGVHVVVPL
TPGHDWDSHKDFASRFAQALSVTEPERFVATMSKAKRKGRIFIDWLRNQRGSTAILPYSA
RARAGAPVAVPIGWDEMEEMKDAHPFGIGDAERLIDRADSLKGWGFATQRLPEI
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atggcggaccgggacgccctggccccctataacgccaagcgcgattttgcccgcacgcgc
gagcccaagggtgtgctcgcgaaaaagggcggcaacagcttcgtcgtgcagaagcatgaa
gcgacgcggctccactgggatttccggctggaagtggacggcgtgctcaaaagctgggct
gtgaccaaggggccaagcctcgatcccgccgaccggcggctggcggtacggacggaggac
caccccttgagctatggcgatttcgaggggatcattcccaagggcgaatatggcggcggc
acggtgatgctatgggaccgaggcacatgggagccggtcgagggcaagagcgccgccgac
atcgacaagggccacctccatttcatcctgcatggcgagcggatgaagggggaatggctg
ctggtgaagatgaaggggcgatccggcgagaagcgcgaaaactggctgcttcgcaagatc
gacgacgatcaggcggacacgcaaacggttctggtcgaccgggcgttgaccagcgttctg
accggccggtcgatggcgcaaatcgccgccgacaagaagggcgcgcagtcgcttgcgggc
gcaaagggcaaggccttcgcgcagaagatgcaggccgcgcgggatcataatgcgaaactg
aagccaaaggcgcgcaaaggcgccgcgaccctgcctcgtttcgtcaagccgcaactggcc
acgcttgtggacagcgtgccggccggcaatgactggctgcatgaaatcaagttcgatggc
tatcgcgccctgatcgcagtggcgggcgaaaaggtgacggtctttacccgcagcggactg
gactggaccgaaaagttcgggccgctggtgcgggcgatggccgcgctcgccctgccgccc
gcgctgatcgacggggagatcgtcgccttcggcccggatggcaatcccagcttctccgca
ttgcaggcggtgctcaagcgcggccacggagcggaacgggaggatgcgcccttgagcttc
ttcgcgttcgatctgttgtcattggacggtgcggatctgaagccattgtccaccatcgaa
cgcaaggaacggctggaggcgctgctccatcaggcacagccacccattcatgtcgccgat
catgtcatcggcgcgggtgagacactttaccggtcgatgtgcgaggcgggacaggaaggc
atcatctcgaaacgcgtcgacgcgccctatcgcggcgagcggaccagaagctgggtgaag
gtgaaatgcacgcgacgccaggaattcatcatcatcggctggactaagagcaacgcgaaa
gggcggggtttccgctcgctcctcctggcgcagcaggagggccgcaaactggtctacaag
gggaaggtcggaaccggcttcgacgctcaaggcatggcgcatctggccgaggcgatggaa
tcgctggaagtggaggagcccccggccgatgtcccgcgcgaggacgcaaggggcgcacgc
tggatagcgccgaaactcgtcgcggaaatcgctttttccgaatttacgggcgacggtcgg
gtccgccatggcagtttcctcggcctgcgcgccgacaagaaggcgaaggatgtgaaaccg
gaaaagagccaaaccgctcccgccccccgaagcgatgtcaagatcagcaaccgggaccgg
gtcatctttcccgaaagcggacagaccaagggggagctggccgattattattcccgcatc
gcacccctgatgctgcctttcgcggccaatcgtccgatcagcctcgtccgctgtccgcag
gggcgcgccaagaaatgcttcttccagaagcatgacagcggcgcttttggcgagcatgtc
cggcaggtcgccattcaggagaaggacggcgggtcagaagattatatctatgtcgaggat
gcggacggcttgcttgcctgcgtgcagatggggacgatcgagtttcatggctgggagagc
cgggccgatgccgtggaaaagcccgaccggatgatcttcgatctcgatcccgatgaggga
ctggattttggcgcggtgaagcgcgccgcgcgggatattcacgaccggctgagcgacatc
ggcctcgtctccttcgcgatgctgtcgggcggaaagggcgtgcatgtggtagtgccgctg
acgccgggccatgactgggacagccacaaggattttgccagccgcttcgcccaggccctg
agcgtgaccgagccggaacgcttcgtcgcgaccatgagcaaggcgaaacgcaagggacgg
atcttcatcgactggctccgcaaccagcggggcagcacggcgatcctgccctattcggcg
cgtgcgcgtgccggtgcgcccgtggcggtgccgatcgggtgggacgagatggaggagatg
aaagacgcccatccgttcggcatcggcgatgcggaaagactgatcgaccgcgcggacagc
ctcaaaggttggggctttgccacgcagaggcttcctgaaatatga

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