Fluviispira sanaruensis: JCM31447_07560
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Entry
JCM31447_07560 CDS
T05949
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
sbf
Fluviispira sanaruensis
Pathway
sbf02020
Two-component system
sbf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sbf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JCM31447_07560
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JCM31447_07560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbf03021
]
JCM31447_07560
Transcription machinery [BR:
sbf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JCM31447_07560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
NPR1_like_C
Motif
Other DBs
NCBI-ProteinID:
BBH52315
UniProt:
A0A4P2VSN8
LinkDB
All DBs
Position
complement(853349..854764)
Genome browser
AA seq
471 aa
AA seq
DB search
MALEIKQGLKTSQRISLSAELKNSITILTLGRIELEKFVNEELEKNPCLVDISNSSKREQ
KNHYEELKYALQKSFNQSDFLEKFNDINRSEEISSANQRKEFPDNSSVNSIHDFIENQIS
TQRLSPYEKECIHIVLQYIDDNGFFNTKLNVIAENHSIHEDDLIFALEIIQKCEPAGVGA
RDLQECLLLQYNKLEKKSKIVEKILTEYWEEFQKQNFQKIAKNEKLTLEEVKESFRFIKA
NLDPRPARQFGTQTNQIIIPDVFVYKRDNEWICSLNENDLPRLKLSKKYTKLIKEIKESM
DRKNNKETYKYISENIKSAKWLVRSLEERDKTILKVVDTILKYQKSFFEYGVDFLTPMTL
KTVAQELTLHESTISRATSGKYLYSPRGIFELKYFFNASVENNAGKELANESIKQHVADF
IRNEDKSKPLSDQEIVEKMFMEKNIKIARRTISKYRESLGILSSAKRIQRF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgaaatcaaacaaggacttaaaacatcacaaagaatttcactttcagctgag
ttaaaaaattcgataacaattttaactttaggaagaattgagcttgaaaagtttgtcaat
gaagaattagaaaagaatccttgtcttgttgatatttcaaattccagtaaaagagaacaa
aaaaatcattatgaagaattgaaatatgccttgcaaaaatcatttaatcaaagtgatttt
ctcgaaaaatttaatgatataaatagatctgaagaaatttcttcagcgaatcaaagaaaa
gagtttccggacaattcctctgtcaactccatccatgattttattgaaaatcaaatatcc
actcaacgtctcagcccctatgaaaaggaatgtattcatatagtacttcaatatattgat
gacaatggatttttcaatacaaaattaaacgttatagcagaaaaccattctatccatgaa
gatgatcttatttttgctcttgaaattatacaaaaatgcgaacccgctggtgtgggcgca
cgagatctacaagaatgcctattgcttcagtataataaactcgagaaaaaatcaaaaatt
gtcgaaaaaatacttacagaatactgggaagagtttcaaaaacagaattttcaaaaaatt
gccaaaaatgaaaaattgactttagaagaagttaaagaatcatttcgttttataaaagca
aatttagatccaagacctgcgaggcaatttggtactcaaacaaatcagattataatcccg
gatgtttttgtctataaaagagataatgagtggatttgtagtttaaatgaaaacgattta
cctagactcaaactttcaaaaaaatatacaaaactgatcaaagaaattaaagaaagcatg
gatagaaaaaataataaggaaacgtataaatatatttctgaaaatattaaatcagctaaa
tggctcgtaagatctcttgaagaaagagataaaactattttaaaagttgttgacacaatt
cttaaatatcagaaaagtttttttgaatatggagttgatttcctcaccccaatgactcta
aaaacagtggcacaagaattgactttacatgaaagcacaatttcacgagcaacatcaggt
aaatatctttattcaccccgaggaatttttgaattgaagtatttttttaacgcctcagtc
gagaacaatgcgggtaaagagttggcaaatgaatcgattaaacagcatgtggctgatttt
attagaaatgaagacaaatcaaaacctctttcagatcaagaaattgttgaaaagatgttc
atggaaaaaaacattaaaatcgctcgccgcactatctctaaatacagagaatctttagga
attctttcctcagccaaaagaatccaaaggttttga
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