Sorghum bicolor (sorghum): 8064784
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Entry
8064784 CDS
T01086
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1 isoform X2
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03020
RNA polymerase
sbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8064784
09124 Replication and repair
03420 Nucleotide excision repair
8064784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8064784
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8064784
Enzymes [BR:
sbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
8064784
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
8064784
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
8064784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
8064784
NCBI-ProteinID:
XP_002450841
UniProt:
A0A921QZ82
C5Y387
LinkDB
All DBs
Position
5:complement(57259565..57268239)
Genome browser
AA seq
1874 aa
AA seq
DB search
MDVRFPHSPAEVAKVELVQFGILSPDEIRQMSVAQIEYAETMEKGKPKAGGLSDPRMGTV
DRKIKCQTCMSGMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDNTK
FKQALKIRNPKNRLKRIYDACKTKKVCGEGDDLDVQQQQDTDEHVNRRGGCGAQQPIITV
DGVKMLVEFKAPKKKNDDQEQLSELVEPKQILSAERVLNVLKNISDKESLLLGLHPKLAR
PDWMILQVLPIPPPPVRPSVMMGTSSKSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIE
EFSQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRVRGNLMGKRVDFSAR
TVITPDPNINIDEVGVPWSIALNLTYPETVTPYNIERLKELVLNGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKIPAPAILKPRPIWTGKQVFNLIIPRQIN
LIRFCSWHSDEEKGFVTPSDTVVRIEKGELLSGTLCKKTLGTGSGSLIHIIWEEVGPDAA
RKFLGYTQWLVNYWLLQNGFSIGIGDMIADAATMADINKAISGAKDCVKKLIKQARDEQL
KAEPGHTMMESFENKVNEALNKARDNVGSNVQNNLSESNNLKAMVSAGSKGSFINISQMA
ACVGQQNIEGKRIPFGFSDRTLPHFTKDDYGPESRGFVENSYLQGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQN
LDSLKMKKEEFDTVFRYELDDENWRPNYLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQ
LGTEIATNGSHTWPLPVNLKRLIWNAQKTFKIDIRTCSDMHPIEIVEAIDKLQERLKVVP
GDDAISIEAQKNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPS
EMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKTKELAKSVQCALEYTTLRSVTHATEVWYDPDPMGTIIEEDLEFVLSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIANEINREFDGDLSCIFSDDNADKLILRLRII
NDEASRGEILDDSAGDEVFLKKIESNMLAEMSLRGIPDINKVFIKEVKVNKFDVSDGFKE
HKEWMLDTDGVNLLAVMCHEDVDATRTTSNHLTEVIEVLGIEAVRRALLDELRSVISFDG
SYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVHAESDY
LRGVTENIMLGQLAPIGTGGCSLFLNDQMLQQAIELQLPSYVDGLDFGITSAPSPLSSPL
SGSSYHEGLMSSSHLLSPDFRHSPIDTYASFSPYVRDMSLSPVPSQGGYSPIPRSESGYS
PIPRSVRYMAVSPIYTPYNAASPVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVS
SQIQSYSSASPIYNPISPNSSRYNPSSPSFSPTSTSPSYSPASASYSPTSPFYSPTSPSY
SPASLSYSPTSPFYSPTSPSYSPASLSYSPTSPFYSPTSPSYSPSSPSYSPTSPTYSPTS
LGYSPTSPGYSPTSPTYSPTSPNYSPTSPSYNLSYTEYNSSNTYSPTRPRITLDSQAPDY
SPTSPTYSPTSPSYSLPSLSYSPNRPTDDSGRPSPDYSPTSPNFSPNRSDSPTAADYSPS
STGQAIEKDGETSH
NT seq
5625 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaggttcccgcactcgccggccgaggtggccaaggtggagctcgtgcagttc
ggcatcctcagccccgacgagatcagacaaatgtcagtggcacaaatagaatatgcagag
actatggagaaggggaagccaaaggctggtgggcttagtgaccctcgaatggggactgtc
gaccgcaaaatcaagtgccagacgtgcatgtctgggatggcagagtgcccaggtcacttt
ggtcaccttgagctcgccaagcccatgttccacattggctttatgaagactgtactgtcc
attatgcgttgtgtctgcttcaactgctccaagatcctcgtggatgaggataataccaag
ttcaagcaggctctaaaaatcagaaacccaaagaataggttgaagagaatatatgatgct
tgcaagaccaaaaaggtctgtggtgagggtgatgaccttgatgtccagcagcagcaagat
actgatgagcatgtaaatagaagaggtggctgtggtgctcagcaaccaattattacagtt
gatggtgtgaagatgcttgtggaatttaaagcaccaaagaagaaaaatgatgatcaagag
caactctctgagttagtggaaccgaagcagattctctctgctgagagggtccttaacgtt
ctcaagaatatatctgacaaggagagtcttctgttgggcttacatcccaaattggcccgt
ccagattggatgatactccaggttcttccaattcctccaccccctgttagaccttctgtc
atgatgggcacttcttccaaaagcgaggatgatttgactcatcaattagctatgataatt
cggcataatgagaacttgaggaggcaagagagaaacggagctccagctcacattatagag
gagttttctcagttgttgcaatttcacattgctacatactttgataatgaacttcctggc
caacccagggccacacagcgttctggaaggccaattaaatcaatttgcagcaggctgaaa
gcaaaagaaggccgggttagaggaaacttgatggggaagcgagttgatttctcagcccgt
actgttatcacacccgatccaaatattaacattgatgaagtgggtgtgccatggagtatt
gctttgaacctgacatatccagaaactgtcactccatataacattgagaggttgaaggaa
cttgtactaaatgggcctcatcctcccccaggcaagacaggtgcaaagtacattatcagg
gaagatggtcagaggcttgatcttcgttatgtgaagaaaagcagtgatcaacatttggag
cttggttacaaggtggagaggcacctcaatgatggagattttgttcttttcaatcggcag
ccaagtcttcacaaaatgtctatcatggggcatcgaatcaaaattatgccatactcaact
ttccgattgaatttgtctgtgacatcaccatataatgctgattttgatggggatgaaatg
aatatgcatgttccccagtcttttgagactagagcagaagttctggaattaatgatggtg
ccaaaatgtattgtgtctccacaatcaaataagcctgtgatgggtattgtccaggacacg
ctgcttggatgtcgcaaaatcaccaaaagggatactctcattgaaaaggacgtatttatg
aacatattgatgtggtgggaagacttcgatggaaagattcctgctcctgccattctcaaa
ccaaggcctatttggactgggaaacaagttttcaacttaattatcccaaggcaaataaat
ttaattcggttttgttcctggcattccgatgaagagaaaggatttgttactcccagtgat
actgtggtcaggatagaaaagggagagcttctatctggcacactttgcaaaaagactctt
ggaacaggctctgggagtctgattcatatcatttgggaagaggttggtccagatgctgca
cgcaagttcttaggttatacgcagtggcttgtcaactactggcttcttcaaaatggtttc
agtattggaattggggatatgattgcagacgcagccacaatggctgacattaataaagcc
atttctggagctaaggattgtgtgaagaagcttattaaacaagcacgtgacgagcaattg
aaagctgagccaggacacaccatgatggaatcatttgaaaataaagtaaatgaggctctc
aacaaggctcgtgataatgttggaagcaatgtgcagaataacttgtctgaaagcaacaat
ttgaaggctatggtcagtgcaggctcaaaaggcagtttcattaacatttcgcaaatggct
gcttgtgtcggacaacaaaatattgagggcaagcggatcccatttggtttcagtgatcga
acattgccacatttcacgaaagatgactatggtcctgaaagtcgtggatttgtggagaac
tcttaccttcagggtctgacaccgcaagaatttttctttcatgctatgggtggtagagaa
ggactgattgatacagctgtgaagacttctgagactggatatatccaacggaggcttgtg
aaagctatggaggacatcatggtgaagtatgatggcactgtaagaaattccttgggagat
gtcgttcagttcatatatggggaagatggtatggacgctgtttggattgaagaacagaat
ttggactctttgaagatgaaaaaagaagagtttgatactgtattccgatatgaactggat
gatgagaattggaggcctaactacttgctgcctgtccattttgatgatttgaagaccata
agtgaattcagaagtgtgttagaggcggaggttcataagctagaagctgacaggttccag
cttggaactgagattgctacaaatggtagtcatacatggcctttgcctgtcaacctcaag
cggcttatctggaatgcccagaagacattcaagattgacatcagaacatgttctgacatg
cacccaatagaaattgtggaagcgatagataagctgcaagaaagactgaaagttgtgcct
ggtgatgatgctataagcattgaggcccagaagaatgccaccttgttctttaatatccat
cttcgtgccacatttgctagcaagagggtcttgagggaatacaggcttacaagggaagca
tttgagtggattattgatgagattgtttggaggttttctcagtctttggtggcccctagt
gaaatgattggatgtgttgctgcacagtccattggggaaccagcaactcaaatgactctg
aataccttccattttgctggtgtcagtgccaagaatgttactcttggagttcccagattg
agagagatcattaatgtcgccaagaagataaaaactccatcattgtctgtttacctaaag
cctgaggtgaacaagacgaaagaattggctaagagtgtccaatgtgctttagagtacacc
acactgcgcagtgtgactcatgccactgaagtatggtatgatcctgatcctatgggaacc
atcattgaagaggatttggaatttgtcctgtcatattatgaaatgcctgatgaggatatt
gacccggataagatttctccttggctgctgcgtattgagcttaatcgtgagatgatggtt
gataagaagttgagcatggctgatatcgccaatgagatcaaccgcgaatttgatggcgac
ttatcatgcatattcagtgatgacaatgcagataaacttattcttcgcctgcgcatcata
aatgatgaagcttcaagaggagaaatactagatgactccgctggagatgaagttttcctc
aagaagatagagagtaacatgttggcagagatgtctcttcgaggcattccggatattaac
aaggtgtttataaaagaggtgaaagttaacaaatttgatgtgagtgatggtttcaaagaa
cacaaggagtggatgcttgatacagacggtgtcaatctcttggctgtcatgtgtcatgag
gatgtcgatgctacaagaacaacaagtaaccatttgactgaagtgattgaggttcttgga
attgaggctgttcgtagagctcttttggatgaacttcggtcggtcatatcgtttgatgga
tcctatgtaaattataggcatttggctgttctttgtgatacaatgacatacagaggtcat
ctgatggctattacaaggcatggtatcaaccgcaatgacactggacctcttatgagatgt
tcttttgaagaaactgtggatatcttgctcgatgctgctgtacatgccgaatctgactac
ctgagaggtgtcactgagaacattatgcttggccagcttgctcctattggtactggaggc
tgctcgctatttctgaatgaccagatgctgcagcaggccattgaacttcaactcccaagc
tatgtggatgggctggactttggcatcacatcagcaccttcacctctctcttcacctctc
tctgggtcgtcatatcatgaaggattgatgtcctcgagtcatctcctgagtccagatttt
aggcactcccccattgatacatatgcttcgttttcgccatatgtcagagatatgtcgttg
tcacctgttccttcacaaggtggttactctccaattcccaggtcggaaagtggttactct
ccgattcccaggtcggtaaggtacatggctgtatcaccgatatatactccatacaatgct
gcatcaccagttaatgcttctacttcaacatcatatactccagtaagtccggtttactca
cccacaactccagtttacacgcccatgagtccagtttactccccaacgactccagtttct
tcgcaaattcagtcatactcgtccgcatctccaatttataatcctatatctcctaactca
tcaagatataatccttcttctccaagttttagtcccacttccacatcaccatcatatagt
ccagcatcagcatcgtatagcccaacatcaccattctatagccctacgtctccatcatac
agtcctgcatcactctcatacagcccaacatcaccattctatagccctacgtctccatca
tacagtcctgcatcactctcatacagcccaacatcaccattctatagccctacgtctcca
tcatacagtccttcgtcaccctcatacagcccaacatcacctacgtacagtcctacatca
cttggttacagcccaacatcgcctggttatagcccgacctcaccaacttacagcccaaca
tcgccaaactacagccccacttcaccaagctacaatctttcgtatactgagtacaattct
tccaacacttactctccaaccagaccaaggatcactctagacagccaggctccagactac
agtccaacttcgccgacttactcaccgacttcaccatcatattcattaccaagtctgtca
tacagcccaaacaggccaactgatgactctggaagacctagcccagattatagcccaacc
tctccaaatttcagccctaacagaagtgactcccccactgcggctgactactccccatcc
tccactggccaagccattgaaaaggacggcgagaccagccactga
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integrated database retrieval system
