Sorghum bicolor (sorghum): 8070314
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Entry
8070314 CDS
T01086
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
8070314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbi04131
]
8070314
Membrane trafficking [BR:
sbi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
8070314
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
PROPPIN
zf-RING_2
ANAPC4_WD40
TPR_7
CENP-B_dimeris
TPR_14
Motif
Other DBs
NCBI-GeneID:
8070314
NCBI-ProteinID:
XP_002448758
LinkDB
All DBs
Position
6:complement(59845241..59851879)
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AA seq
949 aa
AA seq
DB search
MSTGRARGAQLPLQNGAGVDDGDDEREEEEVGDDEEEEDEEEEEEPRLKYQRLGGSVPAI
LSTDAAAAIAVADRMVALGTHNGTLHILDFQGNQVKEIAAHTATINDISFDGDGEYIGSC
SDDGTVTINSLFTDEKLKFEYHRPMKAIALDPNYARNYRRFATGGLAGQVLVLTKKSWGG
YHKKVLRDGEGPIHSMKWRADLLAWANDAGVKVHDMRTDKGIAFIERPKGIPRPEFLLPH
LVWQDDTVLVIGWGTSVKIAAIRTDLSQGLNGLQRTITTASSEKYVDIVGSFQTGYHISG
IAPFGDLLVVLAYIPDEDEKEKTFSTSVTSRQGTAQRPEIHLVSWKNDELTTDALPIHGY
EHYKAKDYALAHAPFSGSSNAGGQWAAGDEPLYYIVSPKDIVVAKPRDAEDHIAWLLQHG
CHEKALAAVEAGQGRTELLDEVGSRYLDHLIIERKYAEAAQRCPKLLRGSPSAWERWVFH
FAHLRQLPVLVPYIPTENPQLSDTAYEVALVALTTNPSFHELLLTTIKNWPPTLYSASPV
ISAIEPQLNSSSMTDSLKEALAELYVINGQYEKALSLYAELLKPEVFEFIEKYNLHDAIR
DKVVNLMIVDNKRTVHLLIQHRDIIPPYEVVEQLLHTSKNCDKRYLLHLYLHALFEIDIH
AGKDFHDMQVELYAEYEPRMLLPFLRTSQHYRLDKAYEIFAQKELVREQVFVLGRMGNAK
EALSTIINKLEDMQEAVEFVTEQHDDELWEELIRQCLQKPEMVGNLLEHTVGNLDPLYIV
SLVPDGLEIPRLRDRLVKIVTDYRTETSLRNGCNDILKADCVNLLVKYYHEARRGVYMAS
MDEEVHGNRADDGSSRGHERSSSIRALDMKSRTRCGARCCLCFDPLPIQDISVIMFYCCH
AYHLSCLEGGLDSMRSNSNQDSDSGTDDEDGSPSGQSRMRCVLCTTAAA
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgggcgcgcgcggggcgcccaactgccgctgcagaacggcgcgggggtcgat
gacggggacgacgagcgcgaggaggaggaagtgggcgatgatgaggaggaggaggacgag
gaggaggaggaggagccgcggctcaagtaccagcggctgggcgggagcgtgccggcgatc
ctctccaccgacgccgcggctgctatcgccgtcgccgaccgcatggtcgcgctcggcacc
cacaacggcaccctccacatcctcgatttccagggcaaccaggtgaaagaaattgctgct
cacacagcaactatcaacgacataagttttgatggggacggtgaatatataggaagctgc
tcagatgatggcacagtgacaataaacagcctcttcactgatgaaaaactaaagtttgag
taccatcgccccatgaaggcaattgctctagaccctaattatgcccggaactatagaaga
tttgctactggtggtttggcaggccaagtacttgtgttgacaaagaagtcttggggaggt
taccataagaaggttttacgtgatggtgaagggccaatccattcgatgaagtggagggcg
gaccttcttgcttgggctaacgatgcaggggtgaaagtgcatgatatgaggacagacaaa
ggaattgcattcatagagagaccaaaaggcattcctcgaccagagttcttgcttccccac
ttagtctggcaggatgatacagtcttagttattggatggggaacaagtgtcaagattgca
gcgattcgaacagatttatctcagggactcaatggcctacaaaggactatcaccacagct
agttctgagaagtatgtggacattgtgggctcattccaaacaggctaccacatatctggg
attgctccatttggtgaccttttagttgtgcttgcctatattcctgacgaggatgaaaaa
gagaaaacatttagtacttctgttacttcacgacagggaactgcacagcgtccagaaata
catcttgtatcatggaaaaatgatgaacttactacagatgctctgcctattcatggttat
gagcattacaaggcaaaagactatgctcttgcgcatgcgcctttctcaggaagtagcaat
gcaggtggacagtgggctgctggtgatgaacctttgtattacattgtgtctcctaaggac
atagtggttgcaaagccaagagatgctgaagatcatattgcttggcttcttcaacatggt
tgccatgaaaaagcattggctgcagttgaggcagggcaaggacgcactgagcttcttgat
gaggtgggttccagataccttgatcacttgataattgaaagaaaatatgctgaagctgct
cagcgctgcccaaagttgctgcgaggatctccttcagcatgggagagatgggtcttccac
tttgctcatcttcgccaacttcctgttttggtcccttatatacctacagaaaatcctcag
ctgagtgatactgcatatgaggttgcgcttgttgctctaaccaccaatccttccttccat
gaacttctcttgactactataaaaaattggccaccaacattatactcagcttcaccggtc
atatctgccattgagccacagctaaactcctcatcgatgactgattcattgaaagaggca
ttagcagaattgtatgtgatcaatggtcaatatgaaaaggcactttccctttatgctgaa
ctcctgaagcctgaagtattcgagtttattgagaaatacaacttgcatgatgccattcgt
gataaggttgtcaatcttatgatagtggataataaaagaacagttcacctactgatccaa
catcgtgatatcattcccccatatgaagttgtggagcagttgttgcataccagtaaaaac
tgtgacaagagatatttgttacacctatatttgcatgctttatttgagatagatatccat
gctggaaaggattttcatgatatgcaggtggagctttatgcagaatatgagccaaggatg
ctactacccttcctccgaaccagtcagcattacaggcttgacaaggcatatgaaatcttt
gcacaaaaggaacttgtaagggagcaggtttttgtccttggtcgaatgggcaatgctaag
gaagctctttcgacaattataaacaaactggaagacatgcaggaggctgttgaatttgtt
acggagcaacatgatgatgaactgtgggaggaactgattagacaatgcctccagaagcct
gaaatggtagggaatctattggaacatactgttggcaatcttgatcctctgtacattgtc
agtttggttcctgatggcttagaaatacctcggttgcgggatcgtcttgtgaaaattgtg
acggattaccggacagaaacttcattgcgtaatggatgcaatgatatacttaaggctgac
tgtgttaaccttttggttaaatactaccatgaggctcggcgtggggtctacatggcaagc
atggacgaggaggtacatggaaacagagctgatgatggatcctcacgggggcatgagaga
tcatctagcatccgggctctagatatgaagtccagaacgagatgtggtgcccggtgttgc
ttgtgcttcgatccattgcctatccaggacatctctgtcatcatgttctactgctgccat
gcatatcatctgtcttgccttgaaggtggtctagactcgatgagatcaaacagtaatcag
gatagtgacagcggcacagacgatgaggatggttccccatcagggcagtctcgtatgcgc
tgtgtattgtgcactactgctgctgcataa
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