Sorghum bicolor (sorghum): 8075957
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Entry
8075957 CDS
T01086
Name
(RefSeq) DNA repair helicase XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03022
Basal transcription factors
sbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8075957
09124 Replication and repair
03420 Nucleotide excision repair
8075957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8075957
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8075957
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
8075957
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
8075957
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
8075957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
Nitrate_red_del
NAMPT_N
Motif
Other DBs
NCBI-GeneID:
8075957
NCBI-ProteinID:
XP_002440580
UniProt:
A0A921Q7Z1
C5Z000
LinkDB
All DBs
Position
9:complement(3928681..3933828)
Genome browser
AA seq
758 aa
AA seq
DB search
MRFDLDGLPVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTAALISLITSYS
LANPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPPPAARSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVREKAASDPESTPLCEFYETFDRAAAAGDLASFMPPGVYTL
ADLRALGRERRVCPYFLARQMVKYANVVVYSYQYLLDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPDDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVSF
VASIHSQAGIDQKMLRFCYDRLHSLMMTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIRPVFDRFETVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWHEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGKKTLLTEEDLQNMAQDGMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcgacctggatggcctgccggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggggagctgaagcgcgccctggacgcgcgcgggcacgcgctgctg
gagatgcccacgggcacgggcaagacggcggcgctcatctccctcatcacctcctactcc
ctcgccaacccgtcccgcccgctccgcctcatctactgcacccgcaccgtgcacgagatg
gagaagacgctcgccgagctccgcctcctcttcgcccacctcccgccgcccgccgcccgc
tccctcctcgcgctcggcctctcctcccgcaagaacctctgcgtccacccgcaggcgtcc
gccgccgcggcgcgggactccgtcgacaccgcctgccgacgcctcacggcgtcatgggtc
cgcgagaaggccgcctccgacccggaatccaccccgctgtgcgagttctacgagacgttc
gatcgggccgctgccgccggcgacctcgcctccttcatgccgcctggggtgtacactctc
gccgacctccgcgcgctcgggagggagcgccgggtctgcccttacttccttgccaggcag
atggtcaagtacgccaatgttgtcgtgtacagctaccagtacctgctcgaccccaaggtg
gccagcattgtgtccagggagatgcagaaggagtgtgtggtagttttcgatgaggctcac
aacatcgacaatgtctgcatagaggcgttgagcgtcagcatccgcaagcagacgctggaa
ggagctgagcgaaacctgcggcgcatctcgcaagagatcgacaggttcaaggccactgat
gccaataggcttcgtgctgaatacaacagactggtggatgggctggcgcagagaggaaat
ctaccaatatcggatgcctggctcgcaaatccggctttgcctgatgatattctgaaggaa
gctgttcctggaaacataaggagggctgaacactttcttgctgtcttgcggaggcttgtc
agatttcttgatggccggcttgaaacagaaaatgttgagaatgaaatgcctgtttccttt
gttgcttcaatccattcccaggctggaatcgaccaaaaaatgctgaggttttgttatgac
cggctacactccctaatgatgacattagagataactgatacagatgagttcatgcacata
cagaccatatgtgactttgccacactgattggaacatatacacggggcttctctattata
atagagccatatgatgagagaatgcctgatattcgtgaccctgttattcagctgagttgc
catgatgcttcactcgcaataagacctgtttttgatcgtttcgaaacggttgtgatcact
tctggaactctcagcccaatagatctttatcctcgtctcttgaattttaatcctgtcata
agcagaagcttcacaatgtccttaacaagagactgtatttgtccaatggtcttgactcga
ggaagtgatcagctacctgtgagtacaaagttcgatatgcgtagtgatcctggtgttgtg
aggaattatggccgcctcttgctggaaatggcttctgctgttccagatggcatagtttgc
ttttttgtcagttattcctatatggatggcattgtcaacagctggcacgaaatgggaatt
ctgcaggacatcatgcaacataaattagtgttcattgaaacaccagatgttgttgagaca
acattggctctcgataactacagaaaggcatgtgattgtggaagaggtgccattttcttc
tctgttgccaggggcaaagttgctgaaggtattgattttgatcggcactatggcagatta
gtcatcatgtttggtgttcctttccagtacacactgagccggatattgcttgctaggttg
gagtacctccgggaaactttccagataaaggagggtgacttcctaacatttgatgctttg
agacaagcagctcaatgtgttggccgtgtgattcgctccaaagctgattatgggatgatg
atatttgctgacaagagatacagtcggcatgataaacggtctaagttgcctgggtggata
ctctcgcatttgcatgatgcgcacctaaatctgagcactgatatggctctccacatagct
cgtgagtttctccggaggatggcacagccatatgacaagacgggaagcggtggcaagaaa
acactgttgaccgaggaggatctgcagaatatggcgcaggacggcatggagatgtaa
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integrated database retrieval system
