Sorghum bicolor (sorghum): 8079273
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Entry
8079273 CDS
T01086
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
8079273
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sbi01002
]
8079273
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8079273
Enzymes [BR:
sbi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
8079273
Peptidases and inhibitors [BR:
sbi01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
8079273
Ubiquitin system [BR:
sbi04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
8079273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
ubiquitin
Ubiquitin_2
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
8079273
NCBI-ProteinID:
XP_021312451
LinkDB
All DBs
Position
3:complement(63902548..63918525)
Genome browser
AA seq
1118 aa
AA seq
DB search
MAVSGAPEQPQREQPQQDHDEEMLVPHQDAIEGPQQDVVEGPQPMEESASAVENQLVPDT
STSRFTWCIENFSRRNVRKHYSDDFIVGGYKWRVLVFPRGNNGDHLSMYLDVADSNLLPP
GWSRNAQFSLAVVNQLDSKASLRKEAIHQFNSRESDWGFTSFMPLLDLYDSSKGYVVNDK
CIIEAEVAVRKTFDFWNYDSKRMTGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPT
TENDTPSGNIPLALQSLFYKLQHCDNSVATKELTKSFGWDSYDSFMQHDVQELNRVLCEK
LENKMKGTPVEGAIQKLFEGHHMNYIECINVDSKSTRKESFYDLALDVKGCSDVYASFDK
YVAQERLEGDNKYQSEEHGLQDAKKGMLFIDFPPVLQLQLKRFEYDFVRDTMLKINDRYE
FPLQLDLDRDDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPKLSDQWYKFE
DERVTKEDMKRALEEQYGGEEELPHTNGLKNAPIRFTKHSNAYMLVYIRESDKEKIICDL
DDEDIPDHLKVRLRKEQEEKECKKKEKAEAHMFTALKVARDSDFKEQIGRHMHFDLVDFD
KVNSFRAPKNMSINDVKEELSKEFGIPVESQRFWVWAKRQNFTYRPSRPLTFLEETSAIG
YLKDAIVAKLPNSEVRLFLEVHLGQENQGIASGKTKEDILIFFKLYDPEKEDLRYVGNFF
VKASGKPSDIVERLNEIAGFPSDEDIELYEEVKFEPAVMCVPIESNISFRSSQIDNGDII
CYQKRCLPDSMDRYRYPSVPSFFEYIHNRQVVYFRLLDKPKEEGFSLELSKRSTYDDVVE
KVARQLRLDDPSKIRLTQHNLSSQQPKPHHIKYRSLNYLSDMLHNHNQMCNILYYDVLDI
PLPELESTRSLKITFENATNHEMSFHTMRLPKSNTLLDLIEDLKSKVELSCNDAEFRFFG
VHLHKICKVYQPGDKIDSVNEPLYIEEVPEEEKNAGPHDRLVHVYHFEDNRHVQYFGEPF
FFLIRDGEALSDIKVRIQKRLQVPDEQFIKWKFAHVTFSRPEYLQDSDIVLNRFHKQKPV
YGAWEQHLGLEHTATTPRRSYFGSQNRHSFERPVKIYN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgtcgggcgcccccgagcagccacagcgggagcagccacagcaggaccacgat
gaggagatgctggtcccgcatcaggatgccattgaggggccgcagcaggatgttgttgag
ggtccgcagccgatggaagaatctgcatccgctgttgagaaccaacttgtgccagatacc
tccacatccagatttacatggtgtattgaaaatttttctaggcgcaatgttagaaagcac
tactctgacgattttattgttgggggatacaaatggcgagtgcttgtcttccccagggga
aataatggtgaccacctttcaatgtatctggatgttgctgattcaaacttgctgcctcct
ggttggagtaggaatgcacaattcagccttgctgtggtaaaccaattagacagcaaagca
tcattaagaaaagaagcgatacaccaattcaattcccgtgaaagtgattggggttttaca
tcttttatgcctttgttggatctgtatgattcaagtaaaggatatgttgtgaatgataaa
tgtatcatagaagctgaggttgctgtgcgtaaaacttttgatttctggaactatgactcc
aaaaggatgactggttatgttggcctgaagaatcaaggggctacctgttacatgaactct
cttcttcagactttataccacattccctactttcgaaaggctgtatatcatatgcctact
acagagaatgatacaccttcagggaacattccattggctttgcaaagtcttttttataaa
cttcagcattgtgataacagcgttgctacaaaagagctcaccaaatcttttggatgggat
agctatgattcgttcatgcagcatgatgtccaagagttgaatagggtcctatgcgaaaag
ctggaaaacaagatgaagggaacccccgtggaaggagcaatacaaaaattgttcgagggt
caccatatgaattatatcgagtgcattaatgttgactcaaaatcgaccaggaaagagtca
ttctatgatctcgcacttgatgtcaaaggatgttctgatgtctatgcatcatttgataag
tatgttgcacaggagaggttagaaggcgataataagtatcaatctgaggaacatggtcta
caggatgccaagaaaggaatgctttttattgacttccctccagttttgcaacttcagttg
aaacggtttgaatatgattttgtgcgggatacaatgctcaagataaatgaccgttatgag
ttcccacttcaattggatcttgatagagatgatggaaaatatctttctccagatgcggat
agaagtgtgcgtaacctatatactcttcacagcgtgctggttcatagcggcggagttcat
ggaggacattactatgccttcattcgcccgaagctgtctgatcaatggtacaagtttgag
gatgaacgagtgacgaaagaagacatgaagcgggcattggaggaacaatatggtggtgaa
gaagagcttcctcataccaatgggcttaaaaatgctcctatcagatttacgaagcattca
aatgcttacatgcttgtttacatccgagaaagtgacaaagagaaaatcatctgcgattta
gatgatgaagatataccagaccaccttaaggttaggttaagaaaggaacaggaagagaag
gaatgcaagaaaaaagagaaggctgaggctcatatgttcactgcattgaaggtggcccga
gactctgatttcaaagagcaaattggaagacacatgcattttgatctcgtggactttgac
aaagttaatagcttccgtgcacctaagaacatgtcaatcaacgatgtcaaggaggagctt
tcgaaagaatttggcatcccagtagaatcccaacgattttgggtgtgggcaaaacgacag
aactttacctacagacccagtcggccattgaccttcctggaggaaacatctgctattggg
tatctcaaagacgcaatagtggcaaagttaccaaattctgaagtacggttgttcttggag
gttcatttgggacaggagaatcaaggaattgcttctgggaagaccaaagaagatatatta
attttcttcaagctctatgatcctgaaaaggaagacctaagatatgtaggaaattttttt
gtgaaagcatcaggaaaaccatctgatatagtagaaaggctgaatgagatcgccggattt
ccgtctgatgaagatattgagctctatgaggaagtaaaatttgaaccagcggtgatgtgt
gtaccaattgagagcaatatttcgttccgttcaagtcagattgacaatggtgatataata
tgctaccaaaaacgctgtttgccagattcaatggatcgataccgatatccaagtgtccct
tctttctttgaatatattcataatagacaggttgtctacttcagattgcttgataaacca
aaagaagaaggcttctctctggagctttcaaaacgctccacatatgatgatgttgttgag
aaggttgctcggcaactacgtctggacgatccttctaaaatccggcttactcaacacaac
ctatcgtctcagcaacccaaacctcaccacatcaaatacaggagtcttaattatctttca
gacatgctacataatcataatcagatgtgtaacattttatattatgacgtcctggatatt
ccgttgcctgaactagaatctacgagatcactgaagatcacttttgaaaacgccacaaac
catgagatgtcgtttcacactatgcggttaccaaaaagtaacactcttcttgatttgatt
gaagacttaaagtcaaaggttgaactttcttgtaatgatgctgaatttcggttttttgga
gtccaccttcacaagatatgcaaggtgtatcaacctggagataagatagattcagttaac
gaacccttgtatattgaagaggttcctgaggaagaaaaaaatgctgggcctcatgaccgt
ttggttcatgtctatcacttcgaagataatcgtcatgttcagtattttggagaacctttc
ttctttctaattcgtgatggtgaagctttgtcggatatcaaagtacggattcagaagaga
cttcaagttcctgatgagcagtttataaagtggaaatttgctcatgttacattcagtagg
ccagaatacctccaagattcagatattgtattgaaccgattccataaacagaaacctgtt
tatggagcttgggaacaacaccttggattggagcatacagccactaccccaagaaggtcg
tactttggcagtcagaaccgccattcttttgagaggcctgtgaagatttacaactaa
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