Sorghum bicolor (sorghum): 8081603
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Entry
8081603 CDS
T01086
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8081603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8081603
03036 Chromosome and associated proteins [BR:
sbi03036
]
8081603
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
8081603
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
8081603
COMPASS/SET1 complex (yeast)
8081603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
PQQ_2
BBS2_Mid
Motif
Other DBs
NCBI-GeneID:
8081603
NCBI-ProteinID:
XP_002461318
UniProt:
C5X781
LinkDB
All DBs
Position
2:complement(690771..695003)
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AA seq
339 aa
AA seq
DB search
MTSLPRVSMEITDEVVKSMKIGLVFQGYNGRISSMDFHRKDTKYLVTASDDEAIRLYDTQ
DAVCLNTINSKKYGAELVCFTDNPSIVLYSSNNGWDESLRLLSMNDNRFIRYYKGHIDRV
VCITLCSGKENFLSASLDRKVLLWDHRAEKSQGVLRVQRRPAVSYDDQGMVFAIAFGGRI
RMYDTRKFGKGPFATFSVGTDDSEPHVIKFSSDGRRILLTTKAGRVHVLDSFEGNRIAMF
HAKPVLTNSTLEASFCPEGNYIISGSGDSSVCAWNVESGKVARWESIDTNTKPPRVRWSP
GSLMFVTGTTELSCWVPDLSKVESFTITDPQAPADTDTK
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtctacctagggtgagcatggagatcaccgatgaggtggtcaagagcatgaag
atagggctggtcttccaaggctataatggcagaattagttctatggattttcacagaaag
gataccaaatatctcgtgacagctagcgatgatgaagcaatccgtctatacgacactcaa
gatgcagtgtgtttgaatactattaatagcaaaaaatatggggctgaacttgtgtgcttc
actgataacccatctattgtcttatattcatcaaacaatggctgggatgaatctctgcgt
ctactctcaatgaatgataaccggtttattagatattataaaggtcacattgatagggtt
gtctgcatcacactttgctctggaaaagaaaattttctctctgcttcacttgaccgtaag
gttctattatgggatcatcgggctgaaaaatcacagggtgtactgcgtgtgcaaaggagg
cctgcagtttcatatgatgaccagggcatggtatttgctattgcctttggtggtcgaata
aggatgtatgatactcgaaaatttggaaaggggccttttgcgaccttctctgtcggtacc
gatgattcagaaccccatgtcataaagtttagcagtgatggcaggcggattctgttaacc
actaaagctgggcgtgttcatgtgctagattcatttgaaggcaataggattgcaatgttt
catgcaaagccagtattaaccaattcaacactagaggcatcattctgtccagagggaaac
tatatcatatctggctctggtgatagtagtgtctgtgcttggaatgttgagagcggaaag
gttgcacgctgggaaagcatagataccaataccaaaccaccgcgggtaaggtggtcacca
ggatccttgatgttcgtgacaggaacaacagaactatcctgctgggttccagatttgtcc
aaggtggaatcctttacaatcaccgacccccaggcccctgccgacaccgacaccaagtag
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