Sorghum bicolor (sorghum): 8084132
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Entry
8084132 CDS
T01086
Name
(RefSeq) nuclear pore complex protein NUP1
Organism
sbi
Sorghum bicolor (sorghum)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
EF-hand_7
EF-hand_1
PK_Tyr_Ser-Thr
EF-hand_6
EF-hand_5
EF-hand_8
EF-hand_4
EF-hand_9
AIF-1
Kdo
Kinase-like
Motif
Other DBs
NCBI-GeneID:
8084132
NCBI-ProteinID:
XP_021307170
LinkDB
All DBs
Position
1:complement(4771810..4785348)
Genome browser
AA seq
2107 aa
AA seq
DB search
MYPSPYAGSGAGGKIRRRPPPRAASTPYERPPAAAAAHRLAAAAAAAAASASSEPGGGER
GGGSGGWVSRLVDPASRLIAGGAARLFGSVFRKRLAPPPAPSPPLSSPPGKNNEPKQDLP
DSTHVTRTFENSMQDSLPIPEGGMDKGKSIVGTSDDKALSEVEHLLMRKTFTKVEFDRLT
DLLRARTIETDPPKSIVPHEEKNEESIRIDGIGGSALRHMDLDDSPAVKVHNHVDSSPAE
LAIQYMSSRYSREPQSSSLRSRLFLENKGEASNIANDRRSGPPIVQAPLEFRNENPGLPV
NGYGTSGLRGRSAIYRMSRSPYFKGQNYSNDVNTSSLPQRAQSLHVGGRQVLKRRVAELE
NEPGSVGPIRRIRQKSNMMSSFRDSRANPRGNLLTSHTSEETFSLSIQSSSSKRQVGSSQ
SLRPLESQKNGGDGKSSDSIPPIPAQSNKMAEKIFEQLNIIAPSPKQQQSVTPNASNSMS
KKPVMQDAGPSSMYNQSSSLKFQDLDGANGPLDTNLNGSLFKKDKLNIIKDVLPKAAFSD
RPTLLGNPVAASKSLTPGFKMAVREDSPELDDDLEIRIPPSSKIETTEQKIDSSRKENIL
EQRVEPNLKKNIADSPVSEQPVASLSKTVPSSSGLLLSNDPGKAVPNASVDNNTGFAFSN
APPGSRPATGVSAMSVASVNDDKQTGASNSIFGIKQSITSVSETSTVKNNSTHGQSVMKP
TPLASTSPERGDKTEKAEDVAKSSEKVLPSAASATLNVPLRFTSAASTSSLSNGFSYSPP
KLETAPPTDKPAISSAASNSIFAVSSSSPAISSSPAFTAFSFSSSAPVGSSVVTSAKSDG
TTVENKAASTISFGVGAAKDEVKSLPPDATSKSPSKLFTSPVSSNIASFSSSVTSTPSFS
PVAASSDVAGIAMAAPSSTSTAPGLQSASTPSFTFPSSGNSLFGFSSPAQSTGLSTSSVA
GTTSQPSAASTFFGSKPAQSEGTMQQPSQSSKPQSGSPFPAMTPGLGACSSGSGTLSFGL
GASSTGSGTISFGVGASSSAPGTSSAFGTAAHSSGPGVFSFGAGASSSGSGTVAFGVGAA
SSGPGVSFGSGAASSGPGFGAGPSSSGPGIVSSGAGASSSGPGTVSFGAGVSSGPGTVSF
GATTSTSGAGFGNSPFGTGATFANPFSASSSTGFTFSSPSSSGASTVASTSVFASSTVSS
ASDFSNPFGSSSSAPSTFTFGQSASSGSGFAFGAQPAPTFSSQPSSVFSFTSANTSMNSS
PQPAFGMTNTNTAFGMASPGNDQMNEDSMADDTSQAAPAPAPIFGSSSFGQQNISPAAPV
FGAPAVQPAGVFQFGSQQGSTQQNPSFPAAGSLEFQGGNFSLGSGGGGGDKSNRRVIKVK
RTTKKRISLQQEDNTTIYLMSGACKPILKLKLGCYRPPAAAGGTLGEPEIRTPIGSRTRW
DGDALLDFAHSGAARRDPLCFLDPSGGSAWAPAPKKIPATRVRPRQPTAAMGNTCVGPSI
TKNGFFQSVSTALWKTPQDGDALPAATAANGPGGASPGRSQSMPPPKPASDVHVAVQSKA
PEPVKIAVSYSEPPPKAAAATQDAKPANTKANANANASPSPNSSAEAPPKPRPKVPQVKR
VSSAGLLVGSVLKRKTENLKDKYSLGRRLGQGQFGTTYLCVERATGKEYACKSILKRKLV
TDDDVEDVRREIQIMYHLAGHPNVISIRGAYEDAVAVHLVMELCAGGELFDRIVQKGHYT
ERKAAELARVIVGVVEVCHSMGVMHRDLKPENFLFADQKEEAALKTIDFGLSIFFRPGQI
FTDVVGSPYYVAPEVLKKKYGPEADVWSAGVIIYILLCGVPPFWAENEQGIFEEVLHGRL
DFESEPWPSISEGAKDLVRRMLIRDPRKRLTAHEVLRHPWVQVGGLAPDKPLDSAVLSRM
KQFSAMNKLKKMALRVIAENLSEDEIAGLKEMFKMIDADNSGQITFEELKVGLKKVGANL
QESEIYALMQAADVDNNGTIDYGEFLAATLHLNKVEREDHLFAAFQYFDKDGSGYITADE
LQVACEEFGLGDVKLEDMIGEVDQDNDGRIDYNEFVAMMQKPTVGLPKKAGLQNSFSIGF
REALRMA
NT seq
6324 nt
NT seq
+upstream
nt +downstream
nt
atgtacccgagcccgtacgccggctccggcgccggagggaagatccggcgccgcccgccg
ccccgcgccgcgtccacgccctacgagcgcccccccgccgccgccgccgcgcaccgcctt
gcggccgccgctgctgctgcagcggcttccgcatcctcggagccgggcggcggcgagcgc
ggcggcgggagcggtggctgggtgtcccggctggtggacccggcctcccgcctcatcgcg
ggcggcgccgcgcgcctcttcggctcggtgttccgcaagcgcctcgccccgccgccggcc
ccgtctccgccgctgtcgtcgcctcccggaaaaaataacgagccaaaacaggacttgcct
gattcaacacatgttaccagaacatttgaaaactcaatgcaggattcgcttccaatccca
gagggtggaatggataaagggaagagcatagttggcacatcagatgacaaagcattgtct
gaagtagagcacttgttaatgcggaagacattcactaaggttgagtttgatcgacttaca
gacttattgcgtgcaagaaccattgagactgatccacctaaatcaattgttcctcatgag
gaaaagaatgaagaaagtatcaggattgatggaatcggaggctcagcattacgtcatatg
gatctagatgattctccggctgttaaagtacataatcatgttgatagttctcctgcagaa
ctcgcgatacaatatatgagctctcgttattcgagggaaccccaatcaagtagtctgcgg
agccgtttgtttcttgagaataaaggggaagcaagcaacattgccaatgataggagatct
ggaccaccaattgttcaggcaccacttgaatttcggaatgaaaatcctggtctccctgtg
aatggctatgggacttcgggattacgtgggcggtcagcgatatatagaatgtctcgctct
ccgtattttaagggtcagaactattccaacgatgtgaacacgtcttcattgccccaacga
gcgcaaagtttgcatgttggtggcagacaggtcctgaaacgaagggtggctgaattagag
aatgaacctggatctgtaggccctattcgtagaattcggcagaagtcaaatatgatgtct
tcttttagggattctcgtgcaaatcctcgaggaaaccttctcactagccatacaagtgag
gaaaccttctcactatccattcagtcttcgagctcaaaaagacaggttgggagtagtcaa
tctctgagacccctagaatcccaaaagaatgggggagatggtaaatctagtgatagcatt
ccacccatacctgctcaatcaaacaagatggctgagaaaatatttgagcagcttaatata
atagctccatcaccaaaacagcagcaatctgttactccgaatgctagtaattctatgtca
aagaaacctgttatgcaagatgctgggccaagcagtatgtataaccaatctagttccctg
aagtttcaagatttggatggtgcaaatggaccccttgatacaaatttgaatggttccctg
tttaagaaagacaagctaaatataataaaagacgtactgccaaaagctgccttttctgat
agacctacccttttggggaacccagttgctgcttctaaatcactgacgccaggctttaaa
atggctgtgagagaggactcaccagagttggatgatgatctggagattcgtattccacca
tcaagtaagattgaaacaactgagcaaaaaattgattcaagtagaaaagaaaatatatta
gagcaaagggtcgaaccaaacttaaagaagaacattgctgattctccggttagtgaacag
cctgtagcatcactgtccaaaactgtcccttcatctagtggtttgcttttatctaatgat
cctgggaaggcagttcccaatgcttctgtggacaacaatactggttttgcattctcaaat
gcacctcctggcagccgtcctgcaactggtgtatcagcaatgtcagttgcttcagttaat
gatgataaacagactggtgcttcaaattctatttttggcatcaagcagtcaattacatca
gtttcggaaacatcaactgtaaaaaacaattccacacatgggcagagtgtcatgaagccc
acaccattagccagcactagtccagagagaggtgataaaacagaaaaagcagaagatgta
gctaaatcatcggaaaaggtgttgccctcagctgcatcagcaacactgaacgtacctctc
cgttttacttctgcggcatctacttcaagcctgagcaatggcttctcgtactcgccacca
aagctcgaaactgctccacctactgataaacctgctatcagctctgctgcttccaactcc
atatttgctgtatccagtagcagtccagctatttcatcgtctcctgcatttacagcattt
agtttttcttccagcgctccggttggctcgtcagtggtaacatcagctaaatcagatggc
acaactgttgagaataaggcagctagcaccatatcatttggtgtaggggctgcaaaagat
gaagtgaaatctttgccaccagatgcaaccagcaagtcgccatcgaaactttttacttca
cctgtgtcatcaaatattgcaagcttttcaagttctgtcacttctacgcctagtttctcc
ccggttgcagcttcaagtgatgttgctggcatagctatggctgcaccatctagtacttct
actgcaccaggtttacagtctgcttcaaccccatcatttacatttccgagctctggaaac
agcctttttgggttcagttcgccagcccaatcaactggcctcagcacatcatcagttgct
ggtactacctctcaaccatcagctgctagcacattctttggtagtaagccggcacagtca
gagggaacaatgcaacaaccatcacagagttcaaaaccacaatctgggtcaccattcccg
gccatgactcctggacttggtgcttgctcgtctggatcggggacgttatcttttggactt
ggagcttcctcgactggttcagggaccatatcttttggtgttggagcatcatcttccgca
cctggaacttcatcagcttttgggacagcagctcactcatctggacctggggttttctct
tttggggcaggagcttcctcatcaggatctgggactgttgcctttggagttggagctgcc
tcatcaggacctggggtgtcttttggatcaggagctgcctcgtctggacctggatttgga
gcaggaccctcctcatctggacctgggatcgtgtcctctggagctggagcctcctcatct
ggacctgggaccgtgtcatttggagcaggagtctcatctggacctggcactgtctctttt
ggagcaacaacttccacatcaggggctggatttggcaattcaccatttggaactggagct
acgtttgcgaacccatttagcgctagctcaagtactgggttcacattttcttcacctagc
tcttctggtgcatcaacggtggccagtacgagtgtgtttgcctcctccacagtttcgtca
gcctcagattttagcaacccttttggctcaagttcatccgcacccagcacatttacattt
gggcaatcagcttcttcaggcagcggttttgcatttggagcgcagccagctccaacgttc
tcatctcaaccatcatcagttttctcatttacttcagcaaacactagcatgaactcgtct
ccacagcctgcatttggaatgactaataccaacacagccttcggcatggcttcccctgga
aatgatcagatgaacgaagacagcatggcagatgacactagtcaggcggcacctgcgcca
gcgccaatatttggttcttcatcatttggacagcagaatatctcacctgctgccccggta
tttggtgctcccgcagtccagccagctggtgtttttcagtttggcagccaacaaggctca
acacagcagaacccgtcctttccagccgctggcagtctagagtttcagggtgggaatttt
tcattgggcagtgggggtggtggcggtgacaagtcgaaccgaagagtgatcaaggtcaaa
aggacaacaaagaagagaatttccctgcagcaggaagataacactactatatatctcatg
tctggggcttgtaaacccatcctcaagctgaaactgggatgttaccggccacctgccgcg
gctggtggtactctgggagagccggagatccggacgcccattggctcccggacccggtgg
gacggcgacgcgcttttggacttcgcacacagcggagcggcgcggcgcgacccgctgtgc
ttcttggatccgagcggggggtcagcttgggcgcccgccccgaaaaagattccggcgact
cgtgttcgcccccgccagccgacggccgcgatggggaacacgtgcgtcggccccagcatc
accaagaacggcttcttccagtccgtctccaccgcgctgtggaagacgccgcaggacggc
gacgcgctgcccgccgccaccgccgccaatggccccggcggcgccagcccgggccggtcg
cagtcgatgccgccgccgaagccggcgtccgacgtgcacgtcgccgtgcagagcaaggcc
cctgagcccgtcaagatcgccgtctcctactcggagccgccgcccaaggcggccgccgcc
acgcaggacgccaagcctgccaacaccaaggccaacgccaacgccaacgccagccccagc
cccaactcgtccgccgaggcgccgcccaagccgcgtcccaaggtgccgcaggtgaagcgc
gtgtccagcgccgggctgctcgtcggctcggtgctcaagcgcaagacggagaacctcaag
gacaagtacagcctggggcggcggctcgggcagggccagttcggcaccacgtacctgtgc
gtggagcgggccaccggcaaggagtacgcgtgcaagtccatcctcaagcgcaagctcgtc
accgacgacgacgtcgaggacgtccgccgggagatccagataatgtaccacctggcaggc
caccccaacgtcatctccatccgcggcgcgtacgaggacgccgtcgccgtgcatctcgtc
atggagctctgcgccggcggcgagctcttcgacaggatcgtgcagaagggccactacacc
gagaggaaggccgccgagctcgccagggtcatcgttggagtcgtcgaggtgtgccactcc
atgggcgtcatgcatcgggatctcaagccggagaacttcctcttcgctgaccagaaggag
gaggccgctctcaagaccattgactttggtctctccattttctttcgccccggtcaaata
ttcacggatgttgttggtagcccttactacgtcgcaccagaggtcctgaagaagaaatac
ggtccagaggcagacgtttggagtgctggtgtaatcatttacatcttgctgtgtggagtg
ccaccattttgggcagagaacgagcagggtatatttgaagaggttttgcatgggagactt
gacttcgagtcagagccgtggcccagtatctccgaaggcgccaaagatcttgtgagaaga
atgcttattagggacccaaggaagagattaacagctcatgaagttttacggcatccgtgg
gttcaggtcggtggtttggctcctgataagccgctggattccgctgttctttctcgcatg
aagcagttctcggctatgaataagctgaaaaagatggctcttagggtaattgccgagaac
ctatccgaggacgagatcgccggcctgaaagagatgttcaagatgatcgacgcggacaac
agtgggcagatcacgttcgaggagctgaaggtgggcctgaagaaggttggcgccaacctc
caggaatcggagatttacgctctgatgcaggccgcggacgtggacaacaacgggacgatc
gactacggcgagttcctcgcggcgacgctgcacctgaacaaggtggagcgggaggaccac
ctgttcgcggcgttccagtacttcgacaaggacggcagcgggtacatcaccgccgacgag
ctgcaggtggcgtgcgaggagttcggcctgggcgacgtcaagctggaggacatgatcgga
gaagtcgaccaggacaatgacgggcgcatcgactacaacgagttcgttgcgatgatgcag
aagccgacggtgggtctgcccaagaaggccggccttcagaacagcttcagcatcggcttc
agggaggcactcaggatggcctga
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integrated database retrieval system
