Shewanella benthica: SHEWBE_3338
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Entry
SHEWBE_3338 CDS
T06707
Name
(GenBank) DNA ligase, NAD(+)-dependent (modular protein)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbk
Shewanella benthica
Pathway
sbk03030
DNA replication
sbk03410
Base excision repair
sbk03420
Nucleotide excision repair
sbk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHEWBE_3338
03410 Base excision repair
SHEWBE_3338
03420 Nucleotide excision repair
SHEWBE_3338
03430 Mismatch repair
SHEWBE_3338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbk03032
]
SHEWBE_3338
03400 DNA repair and recombination proteins [BR:
sbk03400
]
SHEWBE_3338
Enzymes [BR:
sbk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SHEWBE_3338
DNA replication proteins [BR:
sbk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHEWBE_3338
DNA repair and recombination proteins [BR:
sbk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SHEWBE_3338
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHEWBE_3338
MMR (mismatch excision repair)
DNA ligase
SHEWBE_3338
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHEWBE_3338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
DNA_ligase_ZBD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
SQH77301
UniProt:
A0A330M4U4
LinkDB
All DBs
Position
SHEWBE:complement(3208029..3210392)
Genome browser
AA seq
787 aa
AA seq
DB search
MQNDTSLNIQAVAQEIAELTDTLNGHNYRYYVDDAPSIPDAEYDRLLKQLTVLETEHPEY
CFPDSPTQRVGGVPLAKFEQIAHLKPMLSLDNVFSDEEFEAFYNRINDKTATAPTFCCEP
KLDGLAVSILYRDGVYERAATRGDGKTGEDITENVRTIRSIPMKLRGDDFPPLLEVRGEV
IMPKQAFDSLNERARAKGDKEFVNPRNAAAGSLRQLDSKITASRSLGFYAYALGVVEPET
WGLADHHYGQLLQLKSWGFPVSAEVKQCDSVSEVIAYYTDIMTRRSALAYEIDGVVIKVD
NIAQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPIFVGGVT
VSNATLHNADEMKRLELMEGDTVIVRRAGDVIPQIVSVVKQFRKDNAKPIEFPSKCPVCK
SLIEKVIKQKKLKTKSHTIEQATHKCTGGLSCKAQLKESISYFVSKKCFDIDGVGEKIVE
QLIKRSLVNTPADLFQLTTDDVIDLDGFGELSARNLYDSIQAKLVVSLERFILSLGISEV
GDATAKSLSKHLGSFENIKKCPREALVLIPDIGQEVADEIVSYFSNSNSLNFVNKLYDTV
EISPKEKGLSSAIVKKSQMAHYIVKLEVLGISKVTALPIAERFGLFSSLLDAEFSDFLSI
KGLTEKRRSALIEFISKENNREYIIELEKSLFDIGLHWTQEQVVEEDYSPVTYFTGKTVV
LTGSFSTMKRNEAKGILEDKGAKVSSSISKNTDLLVAGEKAGSKLTKAQELGVLVWSEEQ
LIEALNE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatgatacttcactcaatatccaagctgtcgcccaagagattgctgaactcacc
gataccttaaacgggcataattatcgctattatgtcgatgatgcccctagtattcctgat
gccgagtatgaccgtctacttaagcagttaaccgtgctggaaactgagcacccagaatac
tgttttcctgactcaccgactcagagagtgggtggtgtgcccctggccaagttcgagcag
atagcgcaccttaaacctatgctcagcctggacaatgtctttagcgatgaagagtttgaa
gccttctataatcgaattaatgataaaaccgcaacagcgccgacattttgttgtgaaccc
aaactcgacggtctggctgtcagcatcttatatcgtgatggtgtctatgagcgagcggcg
acacgaggtgatggcaaaaccggcgaagacattaccgaaaatgtgcgtaccatacgctct
attccaatgaaattacgcggcgatgactttccgccgctattggaggtgcgtggtgaagtg
atcatgcccaagcaagcatttgattcactgaatgagcgagccagggcaaaaggtgacaaa
gagttcgtcaacccgcgtaacgcagcagctggcagtttgcgccaattagatagcaagatc
accgccagtcgctcactgggtttttacgcctacgccttaggtgtggttgagcctgaaact
tggggattggccgatcatcattatggtcagttgctgcaacttaaatcttggggcttccct
gtgagcgccgaagtgaagcaatgtgatagcgttagcgaggttatcgcttattacaccgat
atcatgactcgccgcagtgcattggcctatgagattgatggcgtggtgatcaaggtcgat
aatattgctcagcaactcaagttagggtttgttgccaaggcgccaagatgggccactgcg
tttaagtttccggcacaagaagagatgaccttactcgaaggggtggattttcaggtcggc
cgcaccggcgccgtgacacccgtagccagactgaaacccatctttgttggcggagtcacg
gtatcgaatgcgacgctgcataacgccgatgagatgaagcgtctagagctaatggagggg
gatacagtcatagtaagacgagctggtgatgttattcctcaaatagtctcagttgtgaag
cagttcaggaaggacaatgcaaaaccgattgaattcccctcaaaatgcccagtctgcaag
tcattaattgaaaaggttattaaacaaaaaaaattaaaaactaagagtcatacaattgaa
caagccactcataaatgtacaggaggactttcctgtaaagctcaattgaaagaatccatt
agctactttgtttctaaaaagtgtttcgatattgatggtgtgggagaaaaaattgttgag
cagttaattaaacgttcacttgttaatactcctgcggatctttttcaactaacaactgat
gatgtgatcgacttagatggttttggtgaactttctgcacggaatttatacgattcaatt
caagcgaagttagtggtgtcacttgaaaggtttatattgagtttaggtatttctgaggtt
ggggatgcaacggcaaagtctttatcaaaacacttgggtagttttgagaatataaaaaag
tgtcctcgtgaggcattggttttaattcctgatattggccaagaggttgcggatgaaatt
gttagctatttttctaactcaaatagcttaaattttgtaaataaactctatgacacagta
gaaataagtcctaaagaaaaaggactatctagtgcgatagtcaaaaagtcacagatggcc
cattatattgtcaaactggaagtgttagggatatctaaagtgacagctctacctatagct
gagaggtttggattattttcttcgcttttggatgctgaattttctgactttttatcaatt
aaagggttaactgaaaagcgacgttcagctttgatagagtttatttcgaaagagaacaat
agagaatatataattgaacttgaaaagagtctttttgatattggccttcactggactcaa
gaacaagttgttgaagaagattatagccctgttacttacttcactggaaaaacggttgtt
ttaactggtagtttttctaccatgaaacggaacgaagctaagggtatccttgaagataaa
ggtgcaaaggtttcaagcagtatctcgaagaatacagatcttcttgttgcaggtgaaaaa
gctggtagcaaactaactaaagcacaagaattaggcgttcttgtttggtctgaggaacag
ctaatagaggcactaaatgagtga
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