Shewanella baltica OS155: Sbal_1907
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Entry
Sbal_1907 CDS
T00478
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent helicase HrpA [EC:
5.6.2.6
]
Organism
sbl
Shewanella baltica OS155
Brite
KEGG Orthology (KO) [BR:
sbl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
Sbal_1907
Enzymes [BR:
sbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sbal_1907
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
nSTAND3
T2SSE
NACHT
HA2_N
ResIII
NTPase_1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ABN61413
UniProt:
A3D3V0
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All DBs
Position
2214207..2218088
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AA seq
1293 aa
AA seq
DB search
MDLNSDKHPLSNAFLNLCYQADASRIRRRLFKLNKEADSDKKTQVLAQLSEQAQAAFEKV
EQRRNARPKIQYPENLPVSLMRDDIARAIAGNQVVIIAGETGSGKTTQLPKICLELGLGC
RGMIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSDSYIKLMTDGILLAE
LTSDRNLDQYDTIIIDEAHERSLNIDFILGYLKQILKRRPDLKVIITSATIDVERFSKHF
NNAPIIEVSGRTFPVETRYRPLVQDSDADLDQIEGIFAAVDELVAEGLGDILIFMNGERE
IRDTAEQLSRRNYRDTEILPLYARLSYGEQSKVFSSHRGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNNRPA
FTDPEILRTNLASVILQMLAIGLGDIGGFPFIEPPDPRHIRDGFLLLEELQAVESKHGKL
VLTPLGRNLAQIPVDPRLARMVVESQQLGCLNEVLVIAAGLSIQDPRERPMEKKQASDEA
HRRFADPSSDFVSWINLWQHLKDQQKELSASQFRKKCRDEYLAYLRVREWQDLYAQLKQA
VHDLKWRLNDTPPSYDTLHRALLSGLLSHVGFKDNNNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAELTETSRLFARCCAKIEPEWLEPLAAHLIKKSYVEPHFEAKPGSVIALENQVLY
GLTVVHRRKVQYGPIDPVEAREIFIRSALAEGQLQTQEAFFVANQKLLEDIESLEHKSRR
RDILVDEQVLVDFYEPRIPEGIYNAQLFFGWWKKAKREQPDLLDFSKALLMQRNADHIST
LDFPDTWHKGNLRLQLSYHFEPAAADDGVSVHIPVALLNQIDDSDFDWLVAGLREEKCIA
LIKSLPKSLRRNFVPAPDYARACVQAMVPFSASLLEAMCKQLLRMSGTRISPEDFDLTQL
PAHLQMNFKIEDDKNNLVAEGRVLDTLKAELQGVVAKAIRQVADKGIEQEALTEWSFGDL
PQQYQQQKGNYQVRAFPALIDKKDSVAIKLFDDEFEALDAHRQGLRRLLLLNIPSPVKHL
QQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRNQAQFEQAKDWVRQEL
NPTAEQIALKVEQILTLYQSIKKRLKGKISLDIAFAMSDIQSQLDKLVFKGFVESCGWNR
LADVARYLKAIEIRVEKLPVDPTRDRLHMQSINKVQEALNAQLAKVPRSQPTPPALIEAR
WMIEEYRVSCFAQVLGTAYPISEKRILNHIQQV
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttggatttgaactcagacaaacatccgctatcgaacgcctttcttaatctttgttatcag
gctgatgcgtctaggatccgtcgtcgtttatttaagctcaataaagaagccgactcagat
aaaaagacccaagtcttagcccagctgagtgagcaagcgcaggcggcgtttgagaaggtt
gagcagcgccgtaacgctcgccctaaaatccaatatcctgaaaaccttcccgtttctttg
atgcgcgatgacattgcgcgcgcgattgcgggcaatcaagtggtgatcattgccggtgaa
acgggctcaggtaaaaccacgcagctccccaaaatttgtttagaactcggcttaggttgc
cgtggcatgattggccacacccagccaagacgattggctgcgcgcagcgtggcgagccga
gttgctgaagaattacaaagcccgctcggtgaagtggtcggctttaaagtgcggtttgcc
gatgcgcttaagagtgactcttatattaagttgatgaccgacggtattttactggcggaa
ttgacctcagatcgcaatctcgaccaatacgataccatcatcatagatgaggcccacgag
cgcagcctcaacatcgattttattctgggctaccttaaacagatccttaaaagacgcccc
gatctcaaagtcatcatcacgtcggcgaccatagacgttgagcgtttttctaagcatttc
aacaatgcgccgattatcgaagtgtcgggccgtacctttccggttgaaacccgttaccga
cccttagtgcaagatagcgatgccgatttagatcaaattgaaggcatttttgccgccgtc
gatgagctggtggccgaagggctgggcgacattctgatctttatgaacggcgagcgggaa
attcgcgatacggccgaacaattaagtcggcgtaattaccgcgataccgaaattttgccg
ctgtacgcgcgtttgtcctatggcgagcagtccaaagtcttcagtagtcacagaggtcgg
cggattgtactagcgaccaacgtggcggaaacctcgctgactgtgccgggtattcgctac
gttatcgacccaggtacggcgcgtatcagccgctatagctatcgcactaaggtgcaacgc
ttaccaattgaacctatctcgcaggcaagcgctaatcagcgccaaggccgttgtggtcgt
gtgggaccgggtatttgtattcgtttgtacgatgaggcggattttaataatcgtccggcg
tttaccgatcctgaaattttgcgcactaacttggcctcggtcattttgcagatgctcgcc
atcggtttgggtgatatcggcggcttcccgtttatcgagccacccgatccacgccatatc
cgcgatggtttcttgctgctcgaagaattacaagcggttgagagcaaacacggcaagcta
gtattgacgccacttgggcgtaatttggcgcaaattcctgtggatccgcgtttggcgcgt
atggtggttgagagtcagcagttaggttgtttgaacgaagtgctggtgattgctgcgggc
ttatcaattcaagatccccgcgagcgtccgatggagaagaagcaagccagtgatgaagcc
catcgccgttttgccgatcccagttccgatttcgttagttggataaatctgtggcagcac
ttaaaagatcagcaaaaagagttatctgctagtcagttccgtaaaaaatgccgcgatgag
tatttggcctatttgcgcgttcgcgagtggcaggatttatacgcccagcttaaacaagct
gtacacgatttaaaatggcgcttaaacgatacgcccccaagttacgataccttgcaccgt
gcgctgttgtcgggcttgttgagccatgttggttttaaagataacaataacgagtattta
ggtgcgcgtaatcgtaaattctttgtgtttcccggttcgccgttggccaaaaaaggccct
aagtggatcatggccgctgagcttaccgaaacatcgcgcttattcgctcgctgctgcgcc
aaaatcgaacccgaatggctagagcccttagcggcgcatttgattaagaaaagctatgta
gagccccattttgaggcaaaacctggcagcgttatcgcccttgagaatcaagtgctctac
ggcttgacggttgtacaccgtcgcaaagtgcaatacggccccatcgatcccgttgaagcg
cgtgagatttttatccgcagcgctttggcagaagggcagttgcaaacccaagaagcgttt
tttgtcgctaaccaaaagctgctagaagacattgaatcacttgagcataaatcccgtcgc
cgcgatattttggtggacgagcaagtgttggtggacttttacgagccgcggatccccgag
gggatttacaacgcccagctgttttttggctggtggaagaaggccaagcgcgagcaaccg
gatttactcgatttcagcaaagcgttgttaatgcagcgcaatgccgaccatatttcgacc
ttggatttccccgatacatggcacaagggcaatttgcgcctgcagctgagttatcacttt
gaacccgctgcggcggatgacggcgtgtcggtgcacattccggtggcgctgctcaatcaa
atcgacgatagcgattttgattggttagtggcggggctgagggaagaaaagtgcatcgcg
ctgatcaaatctttgcctaagagtttacgacgtaactttgtgcccgcgcctgactatgcc
cgcgcttgtgtgcaggccatggtgccttttagtgccagtttgcttgaggccatgtgcaag
caattattgcgcatgagtggcacgcgtatatcgccggaagattttgatttaacgcaactg
cctgcgcatttgcagatgaactttaaaatcgaagacgataaaaacaacttagtcgccgaa
ggtcgggtgctcgataccttaaaagccgagttgcagggcgtggtggcgaaggccattcgt
caggtggcggataaaggtatagagcaagaagcgttaactgagtggtcctttggcgatttg
ccgcagcaatatcagcagcaaaaaggcaattaccaagtacgggcgtttccggcgctgatc
gataaaaaagacagtgttgcgatcaaattatttgatgatgaatttgaagccttagatgct
catcgccaaggtctgcgacgcttgttgctgttaaacattccatcaccggtaaaacattta
cagcaagctttgccgaataaggcgaaattggcgatgtatttcaatccttttggtcaagta
caaatcttgattgatgacattattgccgccgctgtacagcaattattggatgaaaaagcc
ctcgatgtgcgtaatcaagcccaatttgagcaggcaaaggattgggttcgccaagagctc
aacccgaccgccgagcaaattgccctgaaggttgagcagattttgaccttataccagagc
attaagaagcgtctcaagggcaaaattagcttagatatcgcttttgctatgagtgatatt
caaagccaattagacaaattagtgtttaaagggtttgttgaatcctgcggttggaatcgt
ttagccgatgtggcgcgttacttaaaagcgattgaaatacgtgtcgagaagttacctgtc
gatccaactcgcgaccgtttgcatatgcagagtattaacaaggtgcaggaagcattgaac
gcacaattggcgaaagtgccacgatcgcagccgacaccgcccgcgttaattgaagcgcgc
tggatgattgaagagtatcgcgtctcctgttttgcgcaggtgttaggcacggcttatccg
atatcggaaaaacgcattttgaatcatattcaacaggtctaa
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