Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101053502
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Entry
101053502 CDS
T04350
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sbq
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq04820
Cytoskeleton in muscle cells
sbq04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
sbq00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101053502 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101053502 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbq00536
]
101053502 (COL27A1)
Glycosaminoglycan binding proteins [BR:
sbq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101053502 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101053502
NCBI-ProteinID:
XP_010334214
UniProt:
A0A2K6SGI7
LinkDB
All DBs
Position
Unknown
AA seq
1855 aa
AA seq
DB search
MPLGAGGRTDRPASHLGTQGFLFSWILVAFACHLASTQGAPEDVDVLQRLGLSWTKAGSP
APPGVIPFQSGFIFTQRARLQAPTSAIIPAALGTELALVLSLCSHRVNHAFLFAVRSRKH
KLQLGLQFLPGKTVVHLGSRRSVAFDLDVHDGRWHHLALELRGRTVTLVMACGQRRVPVL
LPFHRDPALDPGGSFLFGKMSPHAVQFEGALCQFSIYPVMQVAHNYCTHLRKQCGQAGTY
QSPLGPLFPQDSGRSFTFQSDLALLGLENLTTATPALGSRPAGRGPGVTVAPTKPRRTSP
TNPHQQIAVGGPAQTPLPPAKLSAGKALAPALPASLAGSTRMPRPAATQPSQKITATKIP
KSLPIKPSVPSPSSVSARNSHPTQKMAPPSVTKSTPLTQKQVPPTSRPVPAKISRPTEKP
IQRNPGMPRPPPPSTRPLPPATSSSKTHIPTVVQTEAKMTSRASKPASDRTSTHKPPPST
ALASSPAPTPGSTRTPRPPATMVPPTSGTSAPGTAPAVPTPGSAPTRSKKPTGSEASKKA
GPKSNPRKPVPLRPGKAARDVPLSDVTTRPSPRQSRPSQQTTPAPVLAPAQFLSSSPRPT
SSGYAFFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGL
PGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQ
PGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGIPGKRGK
MGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGS
VGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGVPGFPGARGKPGPLGKVGDKGSIGFPGP
PGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGR
KGFPGRPGLDGVKGEPGDPGRPGPVGEQGLMGFIGLVGEPGIVGEKGDRGMMGPPGAPGP
KGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGLRGAKGRWGPRGPDGPAGEQGSRGLKGS
PGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGE
MGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGD
RGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRSGAKGAKGYQGQ
LGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGLVGPLGPPGP
KGEKGEQGEDGKAEGPPGPPGDPGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPG
HPGPRGRPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGPEGIAGPDG
LPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPHG
KRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDTGFKGIQGPRGPPG
LMGKEGIIGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGRPIQFQ
QDDLGAAFQTWMDTNGALRPEGYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKEN
PARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAIS
RVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPE
VSVDGCKVQDGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atgccgttaggcgccggaggaaggaccgaccggccagcctcgcacttagggacccagggg
tttctcttctcctggatcttagtcgcatttgcctgtcacctggcctccacccaaggagct
cctgaagatgtggacgtcctccagcggctgggcctcagctggacgaaggccgggagccct
gcgcccccgggagtcattcctttccagtcgggcttcatctttacacagcgggcccggctc
caggctcccacgagtgccatcattcctgccgccctgggcacagagctggcactggtgctg
agcctctgctcccaccgggtgaaccatgccttcctcttcgccgtccgcagccggaagcac
aagctgcagctgggcctgcagttcctccccggcaagacggtggtccacttggggtcccgg
cgctcggtggccttcgacctcgatgtgcacgatggtcgctggcaccacctggccctggag
ctccggggccgtacagtcactctggtgatggcctgcgggcagcgccgggtgcctgtcctg
ctgcctttccacagggaccctgcactcgaccccgggggctccttcctctttgggaagatg
agcccgcacgcagtccagtttgaaggtgctctgtgccaattcagtatctaccctgtgatg
caggtcgctcacaattactgtacccacctgaggaagcagtgtggacaggctggcacgtac
cagtccccgctgggccctctcttcccccaagactccggcagatctttcaccttccagtcc
gacctcgccctgctaggcctggagaacttgaccactgccacaccagccctggggtcacgg
ccagcaggcaggggacccggggtgactgtggcacccaccaagccccgaaggactagcccc
acaaaccctcaccagcagatcgcggtgggaggcccagcccaaaccccactgccacctgcc
aagctgtcagccggtaaggcccttgctcctgcgctcccagcctctcttgccggctctacc
agaatgcctcgccctgcggccactcaaccatcacagaagatcacagccaccaaaatcccc
aaaagccttcctatcaagccttcagtcccttctccttcaagtgtctctgccagaaactcc
catcctacccagaaaatggctccaccttcagttacaaagtcaaccccactcactcagaag
caagtgccacctacttcccgtccagttcctgccaaaatctcccgtcccacagagaagccc
atccagaggaacccgggaatgcccaggcccccaccgcccagcacccggcccctacctcct
gctaccagctcctctaaaacacacattcccacggtagttcaaactgaggccaagatgacc
agccgtgccagtaagccggcctctgaccgcaccagcacccacaaacctcccccatccact
gctctagcctcatctcctgccccgactcctggttccaccaggactcctcggccaccagcc
acgatggtgcctccgacctcgggcaccagtgctcccggaacagcacctgccgtccccact
cctggctcagctcccaccagaagcaagaagcccactggatcggaagcctcaaagaaagct
ggacccaagagcaatccccggaagcccgtccccctccgacctgggaaagcagccagggat
gtccccttgagcgatgtgacaaccaggcccagccccagacagtcccggcccagtcagcag
accaccccagccccggtactggccccggcgcaattcctgtcctccagcccccggcccacg
agcagcggctatgcgttcttccacctggcgggatctacgcctttccctctgctgatgggg
cctccggggcccaagggagactgtggtttgccgggtccccctgggctgcctgggctgcct
ggaatccctggtgcacgtgggcctcggggtcctcctgggccttacggaaacccaggtctc
cccggccctcctggagccaaaggacagaaaggggacccagggctctcaccaggaaaggcc
catgatggggcaaagggcgacatgggcttgcctgggctctccgggaatccagggcctccg
ggacgaaagggacacaagggctatcctggaccggcagggcaccctggagaacaggggcag
ccaggacctgagggcagcccaggggccaaaggttaccctggcaggcaggggttacctgga
ccggtaggagatcccggccccaaaggcagcaggggctacattggactcccaggactcttc
ggcctgccaggatctgatggagagcgaggcctgcctggcattcctggcaagaggggcaag
atgggtatgccggggtttcctggagtctttggggaaagaggccctcctggactggatgga
aaccctggagaactgggcctgccaggcccccctggagtccccggcctcattggtgacttg
ggagtgttgggtccgattggctacccaggacccaagggcatgaagggactgatgggcagc
gtgggggagcccggactgaaaggtgataagggtgaacaaggggttccaggtgtgtcagga
gaccccggattccaaggagacaaggggagccagggggtgccagggttccccggcgcacgg
gggaagccagggcctctgggcaaagttggagacaaaggatctattgggtttcccgggccc
cctggacccgagggattcccaggagacatcggcccccctggggacaacggcccagaaggc
atgaagggtaagcctggagcccgaggcctgccgggaccccgtgggcagctggggcccgag
ggagatgagggacccatggggccaccaggggcccctggcttggagggtcagcctggcagg
aaggggtttcctgggaggcccggcctggatggtgtgaagggggaaccaggggatcctggc
cggccggggcctgtgggagagcagggactcatgggattcattggtctggtcggagagccg
ggaatcgtgggagagaagggtgatcgtggcatgatgggacccccaggcgcacctggaccc
aaggggtcgatgggtcatcctggaatgccaggtggtatggggacccctggagaacctgga
ccccagggtcctccaggatctcgaggcccaccaggcctgaggggagcaaagggacgttgg
ggcccccgaggaccggacggaccagctggggagcaagggtcacggggcctgaagggctct
ccaggaccccagggcagaccgggccggcctggacagcagggtgtggctggtgagcgaggc
cacttgggctctcgaggctttcctggcatcccgggtccctcaggccccccaggcaccaag
ggcctcccaggagaaccgggccctcagggaccccaggggccaattgggcctccaggagag
atgggacccaaggggccgccaggtgcagtgggagaaccaggccttcctggggaagccggg
atgaagggtgaccttggacccctgggcacccctggggagcagggcctcattgggcaacgg
ggagagccaggcctcgagggtgacagtggccccatggggcccgatgggctgaagggggac
aggggagacccagggcctgatggagaacatggcgagaaaggccaggaagggctgatgggt
gaggacgggccccccggcccccctggcgtcaccggtgtccggggtcccgaaggaaaatca
gggaagcaaggcgagaagggccgcagtggagccaagggcgccaagggctaccaaggacag
ctgggtgagatgggcgtccctggagaccccggaccccctggcaccccaggccctaaaggg
tcccggggcagcctgggaccaacgggtgctccaggacgcatgggggcccaaggagaaccg
ggactggctggttatgatggacacaagggcctcgtgggacccctcggacctcctgggcca
aaaggtgaaaagggggagcagggcgaggacggcaaggctgaggggccccctgggccacct
ggagatccgggccctgtgggcgatcgaggagaccgtggggaacccggggaccctggatac
ccaggacaggagggtgtgcagggcctccgtggaaagccaggccagcagggccaacccggg
catccgggaccccggggacggccgggacccaaaggatcgaaaggcgcagagggaccaaag
ggaaagcaaggcaaggcaggggccccaggccggaggggtgtccagggcctgcaggggctg
ccggggccccggggcgtggtgggaagacagggccctgagggcatcgctggaccagatggg
cttcctggcagggacgggcaagcgggacagcagggggagcagggagacgatggggaccct
ggtcccatgggccctgccgggaagagaggaaatccaggtgtggctggcttgcctggagca
caggggcccccaggattcaagggtgagagtgggttacctggacagctgggtccccacggc
aagcgagggaccgagggcagaacgggactccctggaaaccagggggagcctgggtccaaa
ggccagccgggcgactctggcgagatgggcttcccaggaatggcaggtctctttggaccc
aagggcccccctggagacaccggcttcaaaggcatccagggccctcgggggccgcctggc
ttgatgggaaaggaaggcatcatcgggcccctcggaatcctgggaccttcgggactcccg
ggtccgaagggtgacaaaggcagccgtggggactggggattgcaaggtccgaggggtcct
cccggccccagagggcggcctggccccccgggtcctccagggcgtcctatccaatttcaa
caagatgaccttggggcagctttccagacgtggatggacaccaacggagcactcagacca
gagggttatagctatccggaccggctggtgctggaccagggaggagagatctttaaaacc
ttacactacctcagcaacctcatccagagcattaagacgcccctgggcaccaaagagaac
cccgcccgggtctgcagggacctcatggactgtgagcagaagatggtggacggtacctac
tgggtggatccaaaccttggctgctcgtccgacaccatcgaagtctcctgcaacttcacg
catggtggacagacgtgtctcaagcccatcacggcctccaaggttgagtttgccatcagc
cgggtccagatgaatttcctgcacctgctaagctccgaggtgacccagcacatcactatc
cactgccttaacatgaccgtgtggcaggaaggcactgggcagaccccagccaagcaggct
gtgcgcttccgggcctggaacggacagatttttgaggctgggggtcagttccggcccgag
gtgtccgtggatggctgcaaggtccaagatggccgctggcatcagacgctcttcaccttc
cggacccaagacccccaacagctgcccatcatcagtgtggacaacctccctcctgcctca
tcagggaagcagtaccgcctggaagttggacctgcgtgcttcctctga
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integrated database retrieval system
