KEGG   Shewanella baltica OS678: Sbal678_1925Help
Entry
Sbal678_1925      CDS       T01725                                 

Definition
(GenBank) DNA ligase (ATP)
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sbt  Shewanella baltica OS678
Pathway
sbt03030  DNA replication
sbt03410  Base excision repair
sbt03420  Nucleotide excision repair
sbt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sbt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sbal678_1925
   03410 Base excision repair
    Sbal678_1925
   03420 Nucleotide excision repair
    Sbal678_1925
   03430 Mismatch repair
    Sbal678_1925
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sbt03032]
    Sbal678_1925
   03400 DNA repair and recombination proteins [BR:sbt03400]
    Sbal678_1925
Enzymes [BR:sbt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Sbal678_1925
    6.5.1.6  DNA ligase (ATP or NAD+)
     Sbal678_1925
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Sbal678_1925
DNA replication proteins [BR:sbt03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Sbal678_1925
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Sbal678_1925
DNA repair and recombination proteins [BR:sbt03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Sbal678_1925
   NER (nucleotide excision repair)
    Other NER factors
     Sbal678_1925
   MMR (mismatch exicision repair)
    Other MMR factors
     Sbal678_1925
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ADT94086
LinkDB All DBs
Position
2255323..2256270
Genome map
AA seq 315 aa AA seqDB search
MTHTSPLQDLTFHRFIRFRFFKQRLLLLSLLILGCLAPVTYAQNSPPSIQLATEFDAQQE
IHIQDFLVSEKLDGVRGYWNGQALLTRQGNLIAAPTWFIANFPNYPLDGELWLGRGQFEA
MSSIVRQTSAKDDDWRKVRFMVFDVPKAGGDFQHRYQFALTKLSGKSHYLEVIAQFQVDS
LEALYQKLDSLVAKGAEGLMLHRSSAMYVSGRNPNLMKLKPYYDAEATVIGHIPGKGQFA
GQMGAIRVQTPDGRIFNIGTGFNLAERQHPPAVGAIITYKYLGLTVNGLPRFASFLRVRI
DLDESNKVISSQEGN
NT seq 948 nt NT seq  +upstreamnt  +downstreamnt
atgactcataccagcccgttacaagatttaacatttcatcggtttatccgctttcgtttt
ttcaaacaacgcctgctcttactcagtctgctgatattaggttgtttagccccagtgacc
tatgcgcaaaactctccaccttcgatacagttggcaactgagtttgatgcccagcaagag
attcatattcaggactttttggttagcgaaaaactcgacggggtgcgaggttactggaat
ggtcaggcactattgacccggcaaggtaatcttattgctgctccgacatggtttatcgcg
aatttcccgaattatcccctcgatggtgagttatggcttgggcgaggccagtttgaggct
atgtcgagcatagttcgacaaacctcagccaaggatgatgactggcgcaaagtgcgattt
atggtgttcgatgttcccaaggcgggtggcgactttcagcatcgctatcaatttgcgtta
actaaactgagtggcaaatcgcattatcttgaagtcatagcgcagttccaagtggacagt
cttgaagctctgtatcaaaaacttgatagcttagttgctaaaggcgctgaaggattaatg
ctgcatcgcagctccgcgatgtatgtcagtggccgcaatcctaatttgatgaaattaaaa
ccctattatgatgctgaagcgacagtgatcggccatataccaggcaaaggtcaatttgca
gggcaaatgggtgcaataagagtgcaaactccagacggccggattttcaacataggcaca
ggttttaatctcgcagagcgtcagcatccccccgctgtgggggcaatcatcacctataaa
tatctgggtcttaccgtaaatggcttacccagatttgccagctttctgcgggtacgcatc
gatttagatgagagtaataaagtcatttcatcgcaagaaggaaactag

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