KEGG   Serinus canaria (common canary): 103812307Help
Entry
103812307         CDS       T05755                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
scan  Serinus canaria (common canary)
Pathway
scan03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    103812307 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scan03400]
    103812307 (LIG4)
Enzymes [BR:scan01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103812307 (LIG4)
DNA repair and recombination proteins [BR:scan03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     103812307 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme LIG3_BRCT Tox-REase-9 APG17
Motif
Other DBs
NCBI-GeneID: 103812307
NCBI-ProteinID: XP_009083591
LinkDB All DBs
Position
Unknown
AA seq 912 aa AA seqDB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKSKTRPEKTKYFKDFLDSWRKFHNALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLSLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTVEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDEKLGHEVLSKRYEILSSIFTPVKGRIHVVHKRSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVVQLK
EVFSRMKDNKAMPLDLIAELEERYWCSSCQLGIFRGSTIYVDCYAVVNEPQSKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDCSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgcacctgtttcacagcctcctcctaaaaaaacggtggcctctcacgtgcct
tttgcagatctctgttctactctggagcgaatacagaagtccaaaactcgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccacaatgcacttcatcaa
aaagagaaagatgtcacagattccttttacccagctatgcggcttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaaactctatattgaa
ctgcttagtttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacgcct
acaggctcacgaggagatgctggagattttgcaatgatcgcatactttgtgctgaaacct
aggagcccaaaacaaggcagactaacagtagaacaagtcaatgaacatttagatgcaatt
gctaataataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattgcac
aatgttactactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcgctt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaagcaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggttcattaactccatttatt
cataacgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaggcacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatgag
aagctggggcatgaagtattaagcaaaagatatgaaatcttaagtagtatatttacccca
gtgaagggcaggatacatgttgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagccatagataacagagaggaaggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgagctggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgtgctgttgcagagacgccccctccaaatgaa
aagccgactgttttccactccatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaaggaccctcct
ggtaacattttgtgtggagctgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgacc
tcagacatgctggaagacctcagaagcaaagcacaaggaaagctggcatctaagcacctt
catatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaaa
tcagagctggaaagcagaatagcccagtgtggtggcagtgtggtacagaacccggggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtcgtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccggcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagctacacagcaaacacagatgttgtgcagctcaag
gaagtgttctcaagaatgaaggacaataaggcaatgcctctggacttgattgcagagcta
gaagagcgttattggtgtagcagctgtcagctcggtatattcagaggaagcactatttat
gtggactgttatgctgttgttaatgagccccaaagcaaaatccctggaactacactttca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtgggagaagattgttcacgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatccgagctgtgggtaacccactcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa

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